Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq265 178 2e-39 seq1140 95.1 1e-14 seq2005 93.3 5e-14 >seq265 Length=606166 Score = 178 bits (196), Expect = 2e-39 Identities = 930/1460 (64%), Gaps = 42/1460 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | || | |||| ||||| |||| ||| || ||||||||| Sbjct 295702 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 295761 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | || || || Sbjct 295762 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCT 295821 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT-CTCCCCCTGCCACATATCAAACTGGAG 114120 || || | |||||| | || | || | | || |||||| || ||||||| Sbjct 295822 TTCAGCAGCTTCCAGTCCAACA-GATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 295880 Query 114121 GATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCC---CTCAACCTCCGC 114177 ||| || | | | | || || || || | |||||||| ||||| |||| | || Sbjct 295881 GATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG---GC 295937 Query 114178 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 114237 || ||| |||||||||| ||||| |||| || || |||||||| || | |||| Sbjct 295938 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAG 295997 Query 114238 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 114297 || |||||| | ||||||| | || || || || ||||||| | ||| Sbjct 295998 CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACC 296057 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTC---CA 114353 ||| || || | || || || | || | | | || ||||| || || | || || Sbjct 296058 TTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTC---CGCT-TCGGGCA 296113 Query 114354 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 114413 | ||||| || || | ||||| | | | || | |||||| || || || || | Sbjct 296114 CTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGG 296173 Query 114414 CATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 114472 ||| || |||| | |||||| | || ||| |||| ||| | |||||| Sbjct 296174 -ATGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAGGGCG 296229 Query 114473 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 114532 || || ||||||||||| || | ||| || | ||||| || | ||||| || Sbjct 296230 ATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTG 296289 Query 114533 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 114592 || | || || || || ||||||| |||| || || |||| ||| || || Sbjct 296290 CAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCG 296349 Query 114593 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 114652 || ||||| |||||||| ||||| || || || || ||||||| || ||| || | ||| Sbjct 296350 TCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCAC 296409 Query 114653 ACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 114711 || | | | | || || || ||| | | |||||||| ||| || |||||||| Sbjct 296410 ACCTGCTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAG 296468 Query 114712 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 114771 |||||||| |||||| ||| ||||| || || || || || | || Sbjct 296469 CTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAG 296528 Query 114772 AGACCA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 |||||| ||| | ||| || | ||||||||| | ||| |||||||| || || Sbjct 296529 AGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAAGTCGGGGATCCACAGGGC 296585 Query 114829 TGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 |||| || || | | | ||| || | | || || || || ||||| | Sbjct 296586 GTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGA 296644 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGA 114943 |||| | | || ||||||||| |||||||||| |||| | || ||| | Sbjct 296645 AGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGT 296704 Query 114944 CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATA 115003 | || |||||| ||||| | || ||| || | || | ||||| || | | Sbjct 296705 TG-CCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAAC 296763 Query 115004 CCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGA 115061 || | || | ||| ||||| || ||| | | | ||||| || | || Sbjct 296764 CCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCT--GA 296821 Query 115062 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 115121 || || || || || ||| |||||||||| | || |||| | | ||| || ||| Sbjct 296822 CCGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGT 296881 Query 115122 AGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCC 115181 |||| || ||||| ||| |||| | |||| ||||||||||| |||| || |||| Sbjct 296882 AGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCC 296941 Query 115182 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATC 115240 | ||||| || |||||||| || || | |||||| ||||| || | | |||| | Sbjct 296942 TGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGC 297000 Query 115241 TTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGC 115300 | ||||||||| | | | ||| ||||| | ||| || || | || |||| | Sbjct 297001 AGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTC 297060 Query 115301 ATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTC 115360 || | ||||| ||||| ||| || | || | || | || | ||||| | | Sbjct 297061 ATGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGC 297120 Query 115361 TCCAAGGTCTTGAGACCAAA 115380 |||| ||||||| ||||| Sbjct 297121 TCCAGAGTCTTGAAGCCAAA 297140 >seq1140 Length=734468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| ||||||| | |||| ||||| |||| ||| || || ||||| Sbjct 319463 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCAGTGGAA 319522 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| ||| |||||||| Sbjct 319523 GCTGTGGGCATGGGGGCCAAGAGCAGGCTGTT 319554 >seq2005 Length=666128 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 130850 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 130791 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||| || ||| || ||||| |||||||||||||||||||| Sbjct 130790 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 130742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597308693943120