Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq265 217 1e-51 seq1140 102 8e-17 >seq265 Length=606166 Score = 217 bits (240), Expect = 1e-51 Identities = 1018/1600 (64%), Gaps = 35/1600 (2%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| ||||||||| ||| ||||| || ||||| | |||| Sbjct 297149 TACAACTTCTTTGGCTTCAAGACTCTGGAGCGGTCCTACCTGCTGAAGATCAACGGCAAA 297090 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||| || || || || |||| ||| | || || | || || ||| | ||| Sbjct 297089 GTGGCCGAACGTCCCCAGCACATGCTCATGAGGGTTTCCGTTGGCATCCACAGAACGGAC 297030 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | ||| | || || || ||| | || ||| ||| ||| || Sbjct 297029 ATCGACGCAGCCATTGAGACCTA-CA---ACCTGCTGTCGGAGAAGTGGTTCACCCACGC 296974 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | || || || ||||| || || ||| ||| ||| |||| || |||||| | Sbjct 296973 CTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCT 296914 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | |||| |||| |||| || || | ||||| || ||| | ||||| ||| Sbjct 296913 CGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCAT 296854 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 |||||| | || || |||||||| | ||| | | | | | | ||| ||| Sbjct 296853 CTCAAAGTCGGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCAACGGGGAGCTA 296794 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| || || |||| ||| ||||| | ||||| ||||| | || | |||||| Sbjct 296793 CATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAA 296734 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | |||| || || || |||||||| || | || || | ||||| | || || Sbjct 296733 CACGGCACGTTATGTCGACCAGGGCGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCT 296674 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||| |||||| | ||| | || ||| |||||| || || || Sbjct 296673 GGAGCCGTGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 296614 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | |||||||||||||||| |||||||| || ||| | || ||| | || ||||| | Sbjct 296613 GGAGCAGAGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAG 296554 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || || | ||| | |||| ||| | ||||||||||| |||||||| ||| ||| Sbjct 296553 AGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGA 296494 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 ||| || | ||||| | | || || || || | |||| | || || Sbjct 296493 GTGTTGGGGTGAGGAGTTTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAGGGTCAA 296434 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || || | ||| | || ||||| | || | || ||| || || || Sbjct 296433 GCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGG 296374 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||||| ||||| ||| ||| ||| | |||| ||| |||||||||| | || || Sbjct 296373 CACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTGGG 296314 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG--GACGAG 94611 ||||| ||| || || ||||| || || || || |||| | || |||||| Sbjct 296313 CACAATCAAAAGCAGCAACCTCTGCACAGAAATCGTTGA--ATACACCAGCGACGACGAG 296256 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | || || ||||| |||| ||||||| || || || | || || | ||| || Sbjct 296255 GTAGCGGTCTGTAATCTGGCCTCCATCGCCC--TCAACAT--GTACGTCACCCCTGAGCG 296200 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAAC 94731 ||| || || | | | || | | | | | || ||| ||| Sbjct 296199 --GACT------TTTGACTTTAAAAAACTAGCATCCGTGACCAAAGTCATCGTCAAAAAC 296148 Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791 |||||| | | ||||| | |||||||| || || || || |||||||| || ||| | Sbjct 296147 TTGAACAAGATCATCGAGATTAACTTCTATCCAGTGCCCGAAGCGGAGAAGTCCAACAAG 296088 Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851 || |||| || || || ||||| || ||||| ||||| || | | |||||||| Sbjct 296087 CGCCACAGGCCGATAGGAATTGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGATGCGT 296028 Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911 || | || ||| ||| | |||| | | ||||| || | ||| || Sbjct 296027 TACCCGTTTGAAAGCCCCGAGGCGCAGCTGCTGAACATCCAAATATTTGAGACCATCTAC 295968 Query 94912 TACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATC 94970 |||| ||| | || | | | | | | ||||| | || ||| || |||| | Sbjct 295967 TACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCTGAGCTCGGCCCCTACGAGAC 295912 Query 94971 GTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC 95030 || | || || || | ||||||| | |||| |||| | |||| || ||| Sbjct 295911 GTACGAAGGCTCTCCGGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCC 295852 Query 95031 CTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAACACGGTGTGAA 95087 | | | ||||| |||| ||||||| || | | | || | |||||| || |||| Sbjct 295851 CACCGATCTGTTGGACT-GGAAGCTGCTGAAAGAGAAGA--TCGCCAAACATGGCGTGAG 295795 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| ||||| ||||||| ||||||||||||||||| || |||||||| |||||||| Sbjct 295794 GAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCACAGATCCTGGGCAACAA 295735 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 |||||| ||||| ||| |||| |||| | |||| | | | || ||| | || || || Sbjct 295734 CGAGTCTATCGAAGCCTACACCAGCAACATCTACACCCGCAGAGTCCTCTCTGGAGAGTT 295675 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAA 95267 | || | || || || || ||||||||| | ||| ||||| | || | Sbjct 295674 TCAGATCGTGAATCCTCATCTGCTCAAAGACCTGACGGAGCAGGGGCTGTGGAGCGAAGA 295615 Query 95268 GGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAG 95307 | | |||||| | || | || |||||| ||| | ||| Sbjct 295614 GATGAAGAACAAGCTCATCGGCAACAACGGATCCATTCAG 295575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| || | | | || || ||| | || ||| |||||||| Sbjct 297539 GTCATGTTCGATAAAATCACCTCCCGCATCCAGAAGCTGTGCTACGGGCTGAACTCTGAC 297480 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || |||||||| | | || | || |||| |||| |||||| | || ||| ||||| Sbjct 297479 TTTGTGGATCCGGCCCAGATTACGATGAAGGTGATTCAGGGTTTGTACAGCGGCGTCACC 297420 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGA 93481 || || |||||||| ||||| || |||| Sbjct 297419 ACCGTGGAGCTCGACACGCTGGCGGCTGAGA 297389 >seq1140 Length=734468 Score = 102 bits (112), Expect = 8e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 319566 CATGGTGTGAGGAACAGCCTGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCACAGATC 319507 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || |||| |||| |||| | |||| | | |||||||| Sbjct 319506 CTGGGCAACAACGAGTCCATTGAGCCCTACACCAGCAACATCTACACCCGCAGGGTGCTC 319447 Query 95197 GCCGGGGAATTCCCCGTCA 95215 | || || || | |||| Sbjct 319446 TCAGGAGAGTTTCAGGTCA 319428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494686009183440