Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq265 170 2e-37 seq1833 107 2e-18 seq1532 87.8 2e-12 seq1140 86.0 6e-12 seq378 82.4 8e-11 >seq265 Length=606166 Score = 170 bits (188), Expect = 2e-37 Identities = 899/1423 (63%), Gaps = 48/1423 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | || ||||| ||||| || || || || |||| || || Sbjct 295708 TTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTG 295767 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || || |||| || ||| || || | || |||| | Sbjct 295768 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGC 295827 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||| |||| | | || ||| | ||||||||||||||| | | || Sbjct 295828 AGCTTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 295887 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| | ||| ||| | |||| |||| |||| || | |||||| ||||| Sbjct 295888 TTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCA 295946 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || ||||| | || || | ||| Sbjct 295947 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGC 296006 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| || |||| |||| ||| | ||||| || |||| ||| || | || Sbjct 296007 CTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCC 296066 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAG 153488 | || || || | || || |||| || ||| ||| || | |||||| Sbjct 296067 AATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACT-----GGATAG 296121 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 || ||||| || ||||| | ||| || | ||||| || | | ||| Sbjct 296122 AAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGATGCTAGT 296181 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607 || | || ||| | ||| || | | ||||| || || | ||| || || || Sbjct 296182 TTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGGGCGATGGAGGC 296237 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 |||||||||||| || ||| ||| || | |||| | ||||| || | ||||||||| Sbjct 296238 CAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTT 296297 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 ||||| ||| || ||||| ||| ||||| ||||| || || ||||| ||||||||| | Sbjct 296298 GCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTA 296357 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGC 153779 ||||||||||| |||||| || || | |||| || | ||| ||| Sbjct 296358 CAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACC--TGC 296415 Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 | ||| | | ||| |||| || | ||||| |||| ||| ||| || Sbjct 296416 TGAGCCTTCAC---CACACGCT--TGA-CCCTCCCCTCCTTCTCATATGAAGTGTAGAGC 296469 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 ||||||||| || || | || ||| | || |||||||||| || ||||||||||| Sbjct 296470 TTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGA 296529 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 ||||| | || | | || | |||||||| || || | ||| || ||||| Sbjct 296530 GACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAG 296589 Query 153960 ATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTA 154019 | ||||| | ||| | |||||| || |||| ||||| | || | | | Sbjct 296590 AAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCA 296649 Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCG 154076 | | ||| |||||| || || | ||| | ||| | ||| || | | || ||| Sbjct 296650 AACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCG 296709 Query 154077 CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTT 154136 ||||| ||||| | || || | |||||| | || | || |||||| | | ||| || Sbjct 296710 CCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTT 296769 Query 154137 GCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA--- 154193 | | ||||||| || || | ||| || || | ||||||| | | Sbjct 296770 GAGTTGCCGTTTGTGCCGGCAATGTAGCTCCC-----CGTTGATCTGATGCAGCTGACCG 296824 Query 154194 --ACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAG 154250 ||||| || || || |||| ||||||| ||| || || | ||| || |||| Sbjct 296825 CCACGCCGATTCCTCCAGCCG-ACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAG 296883 Query 154251 ATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG 154310 ||||| |||||||| ||||| | | |||||| ||| || ||| || || || Sbjct 296884 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTG 296943 Query 154311 CGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATG 154370 || || || ||||| || || ||||| || ||| || | || || | Sbjct 296944 TTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGG 297003 Query 154371 CGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATG 154430 ||| || || ||||| | ||||| || | ||| ||||| | | || | |||| Sbjct 297004 TTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATG 297063 Query 154431 AGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCA 154473 ||||||||||| ||||||||||| ||| | || ||||||| Sbjct 297064 AGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCA 297106 >seq1833 Length=1844611 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 459483 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459424 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| ||||| |||| | |||| |||||||| ||||| ||||| Sbjct 459423 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGG 459364 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || || | | || | ||||||| | | ||||||| Sbjct 459363 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 459304 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| || || ||||| |||||||| Sbjct 459303 TCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 459257 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||| || || || || || | Sbjct 459678 GACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTCTAGCTGCTTTCCAGCG 459619 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || || || ||||| ||| || || | Sbjct 459618 AAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA 459559 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| | | ||||||||| | || | || || |||||||| || || Sbjct 459558 TTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTC 459499 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 459498 ACGAAGATCTGCAT 459485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 459939 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459880 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||| || || | |||| |||||||| ||||| ||||| Sbjct 459879 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459820 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || || | | || | ||||||| | | ||||||| Sbjct 459819 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 459760 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| || || ||||| |||||||| Sbjct 459759 TCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 >seq1532 Length=669350 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | || ||||| || | ||| | | | |||||||| || |||||||||||| Sbjct 291596 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291655 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| || | ||| ||||| || || Sbjct 291656 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291715 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || || | | || | ||||||| | | ||| ||| Sbjct 291716 ATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 291775 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || || || || || ||||| ||||||||| Sbjct 291776 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 291823 >seq1140 Length=734468 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| |||||||| | ||| ||||||||| |||| ||| ||||| || ||||| | Sbjct 320376 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 320435 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| || | |||||| || || ||| | ||||||||||| Sbjct 320436 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGG 320475 >seq378 Length=1964660 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 138509 TACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||||| |||||| ||| | ||||| | | |||||| | | ||||||| Sbjct 434925 TACCTTCTTTGTCTTGGATTTTGGCTTTGACATTGT-CTATGGTGTCACTGGGCTCCACC 434867 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| ||||| ||||| |||||||||||||| Sbjct 434866 TCGAGGGTGATGGTTTTACCCGTCAGCGTTTTCACAAAAATCTGCAT 434820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496225093474080