Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1833 113 4e-20 seq265 104 2e-17 >seq1833 Length=1844611 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | |||||| || |||||||| |||||| Sbjct 459681 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTCTAGCTGCTTTCCA 459622 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 459621 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 459562 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | ||| || || | ||| | || || || ||||| || Sbjct 459561 ACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTC 459502 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 459501 TTCACGAAGATCTGCAT 459485 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || ||||| ||| | ||||| ||| || Sbjct 459922 CACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 459863 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || || ||||||||| |||| | |||||||| || ||||| ||||||||||| ||| Sbjct 459862 AAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTG 459803 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | |||| |||||| | ||| || || | ||| | || || Sbjct 459802 GATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTT 459743 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || ||||| |||||||| Sbjct 459742 TCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || ||||| ||| | ||||| ||| || Sbjct 459466 CACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 459407 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| || || |||| | |||||||| || ||||| ||||||||||| ||| Sbjct 459406 GAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTG 459347 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | ||| || || | ||| | || || Sbjct 459346 GATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTT 459287 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || || ||||| |||||||| Sbjct 459286 TCCAGTCAAGGTCTTCACAAAGATCTGCAT 459257 >seq265 Length=606166 Score = 104 bits (114), Expect = 2e-17 Identities = 490/760 (64%), Gaps = 34/760 (4%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| | || || | ||||||||| || | ||| || | | Sbjct 295642 AGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTG 295701 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | |||| ||||||||||| || || ||||| || || | Sbjct 295702 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 295761 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTC- 146222 || || ||||| |||| ||||| ||| |||||||| ||| | ||||| || Sbjct 295762 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCT 295821 Query 146223 --CCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAA 146280 | | || || ||| | | ||| |||| ||||| | | | ||||||| Sbjct 295822 TTCAGCAGCTT---CCAGTCCAACA---GATCGGTGGGCGTCTTCTCCCACATGTCGTAC 295875 Query 146281 TGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATC 146337 || | |||| || || | | | || | |||||| || || || ||| | || Sbjct 295876 TGGAGGATGCCCTTGCTGACCGGAGAGCCTT---CGTACGTCTCGTAGGGGCCGA-GCTC 295931 Query 146338 TT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA 146396 |||||| |||||||| || ||||| || | |||| |||||||| || | Sbjct 295932 AGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGAT 295991 Query 146397 GTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCG 146454 ||| | || ||| ||||| ||| || | ||| || || | || | ||||| || Sbjct 295992 GTTCA-GCAGCTGCGCCTCGGGGCTTTCAAACGGG-TAACGCATCAGGATGAAGGCATCC 296049 Query 146455 GCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCC 146514 || | ||| || | || | || | || | ||| |||||| ||| | || | Sbjct 296050 GCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCG 296109 Query 146515 G-CAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGT 146573 | || ||| |||| ||| | |||||||||||||| | || |||| | ||| || Sbjct 296110 GGCACTGG-ATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGT 296168 Query 146574 CAAACGATTC-AGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGA 146632 || ||| | || | ||||||| || | | | ||||| || |||||| Sbjct 296169 CACG-GATGCTAGTTTTTTAAAGTCAAAAGTCCGC---TCAGGGGTGACGTACATGTTGA 296224 Query 146633 CGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCT 146692 |||||| ||||||| ||||| || || |||||| | | | || | || || | Sbjct 296225 GGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTT 296284 Query 146693 CGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GT 146749 | | |||||||||||||| ||||| |||||| ||| | ||||| || ||| || Sbjct 296285 CTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCT---CTTTCGGT 296341 Query 146750 TGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 |||||| ||| ||||| ||||||||||| |||||||| Sbjct 296342 TGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTC 296381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475465054227360