Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq265 205 8e-48 seq1532 87.8 2e-12 >seq265 Length=606166 Score = 205 bits (226), Expect = 8e-48 Identities = 878/1379 (64%), Gaps = 24/1379 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||||||| || || ||||||||| | || | | ||| | ||| || Sbjct 297092 AAAGTGGCCGAACGTCCCCAGCACATGCTCATGAGGGTTTCCGTTGGCATCCACAGAACG 297033 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| || | || || ||| | || |||| | || | ||||| ||||| Sbjct 297032 GACATCGACGCAGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCC 296973 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || ||| | ||| ||||| || || ||||||| |||| || || ||||| Sbjct 296972 TCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTC 296913 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || ||| || | || || | || Sbjct 296912 GCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATC 296853 Query 123138 TCCAAATTTGGC-GGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 || ||| | ||| || || || |||||| || | | | ||| || ||| Sbjct 296852 TC-AAAGTCGGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCAACGGGGAGCTA 296794 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 ||| |||| |||| | | | |||| | | |||||||| |||||||||| || Sbjct 296793 CATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAA 296734 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA------GGCGCGATGGCGATCTA 123310 | | | || | ||||||||||||||||| |||| || || | || || || Sbjct 296733 CACGGCACGTTATGTCGACCAGGGCGGCAA---CAAAAGACCCGGAGCCTTCGCCATGTA 296677 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || ||||||||| |||| |||| || || | | | || |||| || Sbjct 296676 CCTGGAGCCGTGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAA 296617 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 ||| || ||| ||| | || | || ||||| | ||| | ||||| ||||| ||| Sbjct 296616 GGAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAA 296557 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 | || || | || | ||||| || ||||||||| || ||||||||| || Sbjct 296556 GAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGA 296497 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550 ||| || || | ||||||| || | ||| | ||| ||| || || | Sbjct 296496 CGAGTGTTGGGGTGAGGAGTTTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAG--- 296440 Query 123551 GGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 ||| | || ||| ||| | | ||| | |||||||| | || || Sbjct 296439 GGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGA 296380 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 |||||| |||||||||||||| |||||||||||||||||| | || | ||| ||| || Sbjct 296379 AACCGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAA 296320 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGA 123727 |||| ||||| ||| | || || || ||| | ||||| | ||||||| | | ||| Sbjct 296319 TCTGGGCACAATCAAAAGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGACGA 296260 Query 123728 TCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG-GCG 123786 | || || || |||||| |||| || || | | || | |||| | ||| Sbjct 296259 CGAGGTAGCGGTCTGTAATCTGGCCTCCATCGCCCTCAACATGTACGTCACCCCTGAGCG 296200 Query 123787 --CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAA 123844 ||||| | || ||| || | | | || ||| | || || || |||||||| Sbjct 296199 GACTTTTGACTTTAAAAAACTAGCATCCGTGACCAAAGTCATCGTCAAAAACTTGAACAA 296140 Query 123845 AATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAG 123904 || ||||| |||| || ||||| || |||||| ||| || | ||||| Sbjct 296139 GATCATCGAGATTAACTTCTATCCAGTGCCCGAAGCGGAGAAGTCCAACAAGCGCCACAG 296080 Query 123905 ACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTA 123964 ||| | ||| | ||| ||||||| ||||| || || || | || |||| |||| Sbjct 296079 GCCGATAGGAATTGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGATGCGTTACCCGTT 296020 Query 123965 CGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGC 124024 |||||| ||| || || |||| || | |||||| || || || || |||| ||| Sbjct 296019 TGAAAGCCCCGAGGCGCAGCTGCTGAACATCCAAATATTTGAGACCATCTACTACGCCGC 295960 Query 124025 TTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAG 124084 |||||||||||||||| || || | |||| | ||||| | |||| ||| Sbjct 295959 CCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTC 295900 Query 124085 CCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTG 124144 |||| ||| || || | ||||||||||||||| | || || || || ||| Sbjct 295899 TCCGGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGATCTGTT 295840 Query 124145 GGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTG 124202 |||||||| | | ||| | | | |||| | || || || | ||| ||| || Sbjct 295839 GGACTGGAAGCTGCTGAAAGA--GAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTG 295782 Query 124203 GTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGA 124261 |||| ||||| ||||| |||| || || || | || |||||||| || |||| Sbjct 295781 CTGGCCCCGATGCCCACGGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCTATCGA 295723 >seq1532 Length=669350 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| ||||| || || ||| || ||| ||| || Sbjct 291614 ACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 291673 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | |||| | |||||||| || ||||||||||| ||||| || Sbjct 291674 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 291733 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||||||| | |||||| || || || | || || Sbjct 291734 ATCTTAGCCTTGA-CGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTT 291792 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || ||||| Sbjct 291793 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 291822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969220659440