Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1747 96.9 5e-15 seq1372 96.9 5e-15 seq962 95.1 2e-14 >seq1747 Length=1312347 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 9541 ATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCT 9600 ||| | ||| |||||||| ||| | |||||| |||| ||||| |||||||||| | Sbjct 976705 ATGTGGAAAGAATCAGGCATCAGTGGGTGCCAGTGGTAAAGGGTGTTGAACTCGGATGAG 976764 Query 9601 ATTCGGTTCTGGTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCT 9658 || |||||||||||||| ||| || ||| |||||| | || |||||||| | |||| Sbjct 976765 ATGCGGTTCTGGTACTGGAAGCGCTGGT--TGAACAGCAGTTCTGGGTCAAATTTGAGCT 976822 Query 9659 GGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCC 9718 ||||| || || || || ||||| || || | ||| | ||| || ||||| || | Sbjct 976823 TGAAGTTATAGCCACTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTC 976882 Query 9719 C 9719 | Sbjct 976883 C 976883 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || |||| || || ||| || ||||| |||||||| ||||||||| | Sbjct 975419 GCGGTGTTGACAATGTTGAAGCCGACGCTGCCTCCGAATGTGCTGGGCTTCCAGTACTCT 975478 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| ||| | ||||| | |||| | || ||||||| ||| | Sbjct 975479 GGGGAGCAGATGGGGTTTCCCAATAAGCCTTTGAGGGAATAAGGTGCCCCCATCTCCACC 975538 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| | || || |||||||| | ||||| || || | | || | |||||| Sbjct 975539 ATGGTTTCCCCAAAGATGGCGTTTTCTCTGGGTTTCTCTACCAAAAGACCTGGGTAGAGC 975598 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || | || || || | | || | | | || || ||||| ||||| ||| Sbjct 975599 TCCACAGCGTCAATGTGTCCGTACATCTCCTCGAGCACTGCGGCCATCTCTTTCTCTCCT 975658 >seq1372 Length=1073052 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| ||||||||| | |||||||||||| ||| ||| || Sbjct 785348 TCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAACAGG 785407 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG--GCACCGG 9080 ||||||| || || ||||| |||| ||| | || |||||||| || ||| | || Sbjct 785408 CCTTTCAGAGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAATATGCTGTTCC-- 785465 Query 9081 GACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGA 9140 ||| | ||| || | |||| ||| | ||| | || | ||| |||| ||| || |||| Sbjct 785466 TACGTGTTTTCTCCAGCATGACGCCTGGGTAAAACTCCAAAGCATCGATGTCACCGTAGA 785525 Query 9141 G 9141 | Sbjct 785526 G 785526 >seq962 Length=536132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || |||| || || ||| || ||||| |||||||| ||||||||| | Sbjct 407954 GCGGTGTTGACAATGTTGAAGCCGACGCTGCCTCCGAATGTGCTGGGCTTCCAGTACTCT 407895 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| ||| | ||||| | |||| | || ||||||| ||| | Sbjct 407894 GGGGAGCAGATGGGGTTTCCCAATAAGCCTTTGAGGGAATAAGGTGCCCCCATCTCCACC 407835 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| | || || |||||||| | ||||| || || | | || | |||||| Sbjct 407834 ATGGTTTCCCCAAAGATGGCGTTTTCTCTGGGTTTCTCTACCAAAAGACCTGGGTAGAGC 407775 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || | || || || | | || | | | || || ||||| ||||| ||| Sbjct 407774 TCCACAGCGTCAATGTGTCCGTACATCTCCTCGAGCACTGCGGCCATCTCTTTCTCTCCT 407715 Score = 93.3 bits (102), Expect = 6e-14 Identities = 124/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| |||| ||||| |||||||||| | || ||||||||| Sbjct 406651 TCAGGCATCAGTGGGTGCCAGTGGTAAAGGGTGTTGAACTCGGATGAGATGCGGTTCTGG 406592 Query 9613 TACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| ||| || ||| |||||| | || |||||||| | |||| ||||| || | Sbjct 406591 TACTGGAAGCGCTGGT--TGAACAGCAGTTCTGGGTCAAATTTGAGCTTGAAGTTATAGC 406534 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | || || ||||| || || | ||| | ||| || ||||| || || Sbjct 406533 CACTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 406485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723673593747600