Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq265 179 5e-40 seq1140 98.7 1e-15 seq2005 89.7 6e-13 >seq265 Length=606166 Score = 179 bits (198), Expect = 5e-40 Identities = 930/1459 (64%), Gaps = 40/1459 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | |||| ||||| |||| ||| || || |||||| Sbjct 295702 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 295761 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || || || Sbjct 295762 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCT 295821 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT-CTCCCCCTCCCACATATCAAACTGGAG 116081 || || | |||||| | || | || | | ||||||||| || ||||||| Sbjct 295822 TTCAGCAGCTTCCAGTCCAACA-GATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 295880 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACCTCCGC 116138 ||| || | | | || || || || | ||||| || ||||| |||| | || Sbjct 295881 GATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG---GC 295937 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 || ||| |||||||||| ||||| |||| || || |||||||| || | |||| Sbjct 295938 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAG 295997 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 || |||||| | ||||||| | ||| || || || ||||||| | ||| Sbjct 295998 CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACC 296057 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTC---CA 116314 ||| || || | || || || | || | | | || ||||| || || | || || Sbjct 296058 TTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTC---CGCT-TCGGGCA 296113 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 | ||||| || || | ||||| | | | || | |||||| || || || || | Sbjct 296114 CTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGG 296173 Query 116375 CATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 116433 ||| || |||| | |||||| | || ||| |||| ||| | |||||| Sbjct 296174 -ATGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAGGGCG 296229 Query 116434 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 116493 || || ||||||||||| || | ||| || | ||||| || | ||||| || Sbjct 296230 ATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTG 296289 Query 116494 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 116553 || | || || || || ||||||| |||| || || |||| ||| || || Sbjct 296290 CAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCG 296349 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAT 116613 || ||||| ||||| || ||||| || || || || ||||||| || ||| || | ||| Sbjct 296350 TCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCAC 296409 Query 116614 ACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 || | | | | || || || ||| | | |||||||| ||| || |||||||| Sbjct 296410 ACCTGCTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAG 296468 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 ||||||||| |||||| | ||| ||||| || || || ||||| | || Sbjct 296469 CTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAG 296528 Query 116733 AGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 |||||| ||| | ||| || | ||||||||| | ||| |||||||| || || Sbjct 296529 AGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAAGTCGGGGATCCACAGGGC 296585 Query 116790 CGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 |||| || || | | | ||| || | | || || || || ||||| | Sbjct 296586 GTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGA 296644 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGA 116904 |||| | | || ||||||||| |||||||||| |||| | || ||| | Sbjct 296645 AGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGT 296704 Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964 | || |||||| ||||| | ||||| ||| | || | ||||| || | | Sbjct 296705 TG-CCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAAC 296763 Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 || | || | ||| ||||| || ||| | | ||| | ||||| | || Sbjct 296764 CCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTT-GATCTGATGCAGCTGAC 296822 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 || || || || || ||| |||||||||| | || |||| | | ||| || |||| Sbjct 296823 CGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTA 296882 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 ||| || ||||| ||| |||| | |||| ||||||||||| |||| || ||||| Sbjct 296883 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCT 296942 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 117202 ||||| || |||||||| || || | |||||| ||||| || | | |||| | Sbjct 296943 GTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCA 297001 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 | ||||||||| | | | | | ||||| | ||| || || | || |||| || Sbjct 297002 GGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCA 297061 Query 117263 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 117322 | | ||||| ||||| ||| || | || | || | || | ||||| | || Sbjct 297062 TGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCT 297121 Query 117323 CCAAGGTCTTGAGACCAAA 117341 ||| ||||||| ||||| Sbjct 297122 CCAGAGTCTTGAAGCCAAA 297140 >seq1140 Length=734468 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||||| | |||| ||||| |||| ||| || || ||||| Sbjct 319463 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCAGTGGAA 319522 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| |||||||| Sbjct 319523 GCTGTGGGCATGGGGGCCAAGAGCAGGCTGTT 319554 >seq2005 Length=666128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 130850 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 130791 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || ||| || || |||||||||||||| |||||||| Sbjct 130790 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 130742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613461079596240