Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq265 199 6e-46 seq1140 102 1e-16 >seq265 Length=606166 Score = 199 bits (220), Expect = 6e-46 Identities = 586/892 (66%), Gaps = 16/892 (2%) Strand=Plus/Plus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| || ||||| | ||| | || || | |||| || ||||||||| | Sbjct 296275 TCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTC 296334 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002 || ||||| |||| ||| ||||||| |||| ||||| | ||| | || |||| || ||| Sbjct 296335 TTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCG 296394 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGA 205059 | |||| | ||||| | |||||| |||| |||| || | |||| | Sbjct 296395 -ATAATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTTGAC---CCTCCCCTCCTT 296450 Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA-CACGTCCATCAGCCCTGGAC 205118 ||| ||| ||||| ||| | |||| || ||| | ||| || |||||| |||| Sbjct 296451 CTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACAC-TCGTCCAGCCCGGGAC 296509 Query 205119 ATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | | |||||||||||||||||||| || | | || ||| |||| ||| |||| || Sbjct 296510 ACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGT 296569 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || |||||||||| |||| || || || | |||||| | || | ||| ||||| Sbjct 296570 CGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCT 296629 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | |||| ||||| ||| | | | ||| |||||||||||| | ||| ||| | Sbjct 296630 TCTTCAGCTCCAG-GAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAG 296688 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || || || || ||||| || |||||||| || || | | | |||| |||||| | Sbjct 296689 GCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTC 296748 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG--GCCGAGCCTTCAG 205415 ||||| || || | ||||| | | | ||||| |||| | ||| || | || | Sbjct 296749 AGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTT--G 296806 Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACT 205475 || | | | || ||| |||| || || |||| |||| | ||| |||| |||| Sbjct 296807 ATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACT 296866 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535 | ||||||| |||||||||| ||||| |||||| || | | ||| |||| Sbjct 296867 GCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGC 296926 Query 205536 AAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGC 205595 | ||||| | |||||| || || | |||||| || || ||||||| |||| | Sbjct 296927 TGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACC 296986 Query 205596 GCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATAC 205655 |||||| || |||||||||| | | || | || | ||| || | Sbjct 296987 ACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGC 297046 Query 205656 CTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGA 205715 | | || | |||||||| | ||| || || | || ||| | |||| | ||| | Sbjct 297047 CAACGGAAACCCTCATGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCA 297106 Query 205716 GCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTC 205767 |||| |||| | ||| || || || | |||| |||||| ||| | |||| Sbjct 297107 GCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTC 297158 Score = 152 bits (168), Expect = 8e-32 Identities = 345/513 (67%), Gaps = 7/513 (1%) Strand=Plus/Plus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| | | || || | || || |||| || | ||||| ||| Sbjct 295574 CCTGAATGGATCCGTTGTTGCCGATGAGCTTGTTCTTCATCTCTTCGCTCCACAGCCCCT 295633 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| || | ||| || || || | ||||||||| ||||| || || || | Sbjct 295634 GCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTC 295693 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| | Sbjct 295694 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 295753 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| |||||||||||| || ||||| |||||| ||| | ||| || | ||| || Sbjct 295754 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGA 295813 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | ||||| ||||||| || | |||| || ||||||||||| Sbjct 295814 TCTTCTCTTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGT 295873 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCT 204457 |||| | |||||| | ||||| || ||| | ||||||| || ||| || ||| Sbjct 295874 ACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCA 295932 Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517 | ||||||| ||| || ||| |||| ||||| ||||||||||| || || | | Sbjct 295933 GCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATG 295992 Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575 || | | ||| ||||| | | ||||||| || || || | || | |||| Sbjct 295993 TTCAGCAGCTG--CGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCG 296050 Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 |||| || || || || ||||| | ||| |||| Sbjct 296051 CCAAACCTTGAACGCCAATTCCTATCGGCCTGT 296083 Score = 114 bits (126), Expect = 2e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| ||| || || || ||||| ||||| Sbjct 295312 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATGTT 295371 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||||||| |||||||| || || || ||||| |||| | ||||| Sbjct 295372 CAGGGACTGGCTCTGGTCGATG-AAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTCT 295430 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || ||||||||||| || || Sbjct 295431 TCTGGGAGATCTCCCACACGGTTTT 295455 >seq1140 Length=734468 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | || || | Sbjct 319428 TGACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAA 319487 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | ||||| || ||| || ||||||||||| |||| ||||| Sbjct 319488 TGGACTCGTTGTTGCCCAGGATCTGTGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCA 319547 Query 204312 GGGAGTTGCGCACACC 204327 || ||| | |||||| Sbjct 319548 GGCTGTTCCTCACACC 319563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795095424207840