Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1532 152 5e-32 seq1833 131 2e-25 seq714 87.8 2e-12 >seq1532 Length=669350 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 291594 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 291535 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||| || || |||||| | ||||| Sbjct 291534 GACACCATTGAGAACG-TGAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCA 291476 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||||||||| || || | ||||||||| ||||||||| Sbjct 291475 GCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 291416 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | || |||||| |||| ||||| Sbjct 291415 TATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGG 291368 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| ||||||||| | || |||||| | Sbjct 291826 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCC 291767 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | | | |||| | || | || |||| || || || || |||||| | | Sbjct 291766 CAGCGACACCATTGAGAACG-TCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTG 291708 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || ||||||||||| || || | ||||||||| ||||| Sbjct 291707 ACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACT 291648 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | || || ||| | || |||||| |||| ||||| Sbjct 291647 ACAACATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGG 291596 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| ||| | Sbjct 291366 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 291307 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | ||| | Sbjct 291306 GACACCATTGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAA 291248 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||||||||| || || | ||||||||| ||||||||| Sbjct 291247 GCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 291188 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || | || |||||| | || ||||| Sbjct 291187 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGCGG 291140 >seq1833 Length=1844611 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || | || || || ||||||||| | || || ||| || Sbjct 459254 AAGATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCCC 459313 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | || | || |||| || || ||||| || || | || Sbjct 459314 AGCGACACCATCGAGAACG-TCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGA 459372 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||||||||| || || | ||||||||| |||||| Sbjct 459373 CCAGCAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTA 459432 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || ||| | ||||| ||| ||||||| || Sbjct 459433 CAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGG 459483 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || ||| ||| | Sbjct 459485 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459544 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 459545 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 459604 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || |||| ||||| ||| |||||||||| Sbjct 459605 CAGCGTCTCATCTTCGCTGGAAAGCAGCTAGAAGACGGTCGCACTCTCTCCGACTACAAC 459664 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || || | ||||| ||| |||| || || Sbjct 459665 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTGAGGGGAGG 459711 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || || ||| ||| | Sbjct 459713 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459772 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || ||||| || || | ||||| Sbjct 459773 GACACCATCGAGAACG-TGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCA 459831 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || || || || || | ||||||||| ||||||||| Sbjct 459832 GCAGCGTCTCATCTTCGCTGGAAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAA 459891 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | ||||| ||| ||||||| || Sbjct 459892 CATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGG 459939 >seq714 Length=827726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| ||| || || ||| ||| || | |||||||| || || | || | Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 |||||||| | ||||| ||||| ||| || ||||||| ||||| || || ||||||| Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAG 573842 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || | ||| || Sbjct 573843 CCACGAGTCTCTCCCC 573858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135199509760