Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq402 235 4e-56 seq1586 125 5e-23 seq1253 107 1e-17 seq403 107 1e-17 >seq402 Length=1600201 Score = 235 bits (260), Expect = 4e-56 Identities = 945/1474 (64%), Gaps = 17/1474 (1%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| ||||| ||||||||||| | || || || || || | || ||||| |||| Sbjct 1359197 CACATTCAGAATTCCATTGGCATCAATGTCGAAGGTTACCTCCACCTGTGGGACACCTCG 1359256 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 ||||||| ||||| ||| | | ||| | || || || || || || || | Sbjct 1359257 GGGAGCAGGAGGGATACCTGTGAGCTCAAACTTGCCAAGGAGGTTGTTGTCCTTGGTCAT 1359316 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 || |||||||| | | || || || | | || ||||||||||| || | Sbjct 1359317 GGCTCTCTCACCCTCATACACCTGAATCAGCACACCTGGCTGGTTATCTGAATATGTAGA 1359376 Query 517444 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 || | ||||| | | || || || || ||||||| | || | | ||||||| Sbjct 1359377 GAAGA-TCTGGGTCTGCTTGGTGGGGATGGTGGTGTTTCGTTTGATTAAAGGTGTCATAA 1359435 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 517562 ||||| || || || | || ||||| ||||||| ||||| | || | | || || Sbjct 1359436 CTCCACCCGCAGTCTCAATGCCCAGAGACAGAGGAGCCACATCCAGCAGTAGCAAATCTT 1359495 Query 517563 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 | | ||||| ||| | ||| | || ||||| || || | || |||||||| || | Sbjct 1359496 GGACATTTTCTGAAGTGTCACCCATCAGGATAGCAGCCTGGACTGCTGCACCATAGGCCA 1359555 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 517681 |||||||||| || || | | | || | || | | ||||| ||||| | || |||| Sbjct 1359556 CAGCTTCATCTGGGTTGATGCTCTTGTTCAATTCTCTGCCATTAAAAAAGTCCTGCAAGA 1359615 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 || | | || ||||| | | || || ||||| | ||||||||||| | || Sbjct 1359616 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACAATTTCATGGATCTTG 1359674 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || |||||||| || | ||| | | || ||||| || || || | || || Sbjct 1359675 GACTTATCCAGCTTGGCATCTTGCAGAGACTTCTCAACTGGATCCAGTGTTCCCCTGAAG 1359734 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 517859 | ||||| || || || || || || || || ||| | || || || || | Sbjct 1359735 AGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATTGAGGTGTAGAAGTCGATAC 1359792 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 517919 | || |||| ||| |||| |||| ||| || || || || || | | || | Sbjct 1359793 CCTCAAACAGAGAGTCAATCTCAAGGCTAGCCTGGGTGCTGGAGGACAGGGTCCTCTTTG 1359852 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGT 517977 | | |||||| || || | || || | | ||| | || ||| | | | || | Sbjct 1359853 CTCTTTCACAAGCAGTGCGCAGCCTCCTCACTGCTCT--CTTATTTTGGCTGATGTCCTT 1359910 Query 517978 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTC 518037 || | |||||| || || || || ||| | | || | || || ||||| || || Sbjct 1359911 CTTGTGTTTTCTTTTAAATTCCTCTACAAAGTGGTTGACCATCCGGTTGTCAAAGTCCTC 1359970 Query 518038 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 518097 || || | | || | |||| || | | | |||| || | |||||||||| | Sbjct 1359971 CCCACCAAGATGTGTGTCGCCTGCAGTGGATTTCACTTCAAAGATGCCATCTTCAATGGT 1360030 Query 518098 CAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTT 518156 || | | || ||| ||| || ||||| | |||||| || || || || | | | Sbjct 1360031 CAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACGTTGCGCTCCCC 1360090 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 | | || ||| ||| || || || || | || || || || |||||||| || || | Sbjct 1360091 TCTTTTACCTTT-ATCCAGGCCGTAGGCGATGGCTGCTGCTGTGGGTTCATTGATGATCC 1360149 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| |||||| || |||| || || || || || |||||||| || || || |||| Sbjct 1360150 TCAGAACATTCAGTCCAGAGATCACCCCAGCGTCCTTGGTGGCTTGCCTCTGGGAGTCGT 1360209 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 ||||||| || ||||| || || || || | | |||| || || | || || | Sbjct 1360210 TAAAATACGCTGGAACTGTGATGACTGCGTTTGACACTTTTTGTCCCAGGTAGGCTTCAG 1360269 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGG 518396 | | | ||||||||| | | ||| || || |||| ||||||| | | |||| Sbjct 1360270 CGATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCTTCTGGGTAGAAGGCTTTGG 1360329 Query 518397 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 518456 || || ||| |||| | | ||||| | | || | || ||||| || | Sbjct 1360330 TCTCCCCTTTATACTCAACTTGGACTTTGGGTTTTCCGCTATCACTGATCACTTTGAAGG 1360389 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 ||||| ||||| || || || ||| |||| |||| | ||| || || | || | Sbjct 1360390 GCCAGAGCTTCATGTCAGACTGGACAACAGGGTCGGTAAACTTTCTCCCGATGAGCCGCT 1360449 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 | |||||||| || || |||| || || || ||| | |||| ||||| |||||||||| Sbjct 1360450 TGGCATCAAAGATTGTGTTGGCGGGGTTCATGGCAACCTGATTCTTGGCAGCATCTCCAA 1360509 Query 518577 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 518636 | || ||||| || ||||| | ||||| ||||| || | || || || || | Sbjct 1360510 TGAGCCTCTCTGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTTCTGTTTCCCTGGTCGT 1360569 Query 518637 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTA 518696 | || || || || ||||| |||| || | || || |||||| | | || || || | Sbjct 1360570 TGGCGATTATCTCCACTTTGCCATGCTGGAAAACCCCGACACAAGAATAGGTGGTGCCCA 1360629 Query 518697 AATCAATACCAATAGCAAT---TTTATCTGACAT 518727 |||||| ||||||| || |||| ||||||| Sbjct 1360630 GATCAATGCCAATAGATATTCCTTTAGCTGACAT 1360663 >seq1586 Length=1120755 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| || ||||||||||| ||||| || || | || ||| Sbjct 832209 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCAGCACA 832150 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| |||| ||||||||||||||||| | || || || || || || Sbjct 832149 TTAAGCCCAGCAATGGTTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAGTAA 832090 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| |||||||| |||| Sbjct 832089 GCAGGAACTGTAATAACTGCAT 832068 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| ||| | |||| ||||| ||||| ||||||||||| | ||||| || || ||||| Sbjct 833432 TTTGTCAACTGCAGATACATTGAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAAT 833373 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 |||||||| ||||| | |||||||| || || || | |||| | |||||| |||| Sbjct 833372 CTGAGGGACACCTCTGGGTGCAGGTGGAATACCGGTCAGCTCAAATTTGCCCAGAATATT 833313 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTC 517398 ||| || || || | || |||||| || Sbjct 833312 ATTGTCCTTGGTCATGGCTCTTTCACCTTC 833283 >seq1253 Length=6611 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| ||||| ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 5345 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 5404 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 5405 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 5464 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| || || | || |||| ||||| Sbjct 5465 GCAGGCACGGTCACTACAGCATTTGTTAC 5493 >seq403 Length=2440063 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| ||||| ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 729294 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 729353 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 729354 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 729413 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| || || | || |||| ||||| Sbjct 729414 GCAGGCACGGTCACTACAGCATTTGTTAC 729442 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| ||||| ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 731079 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 731138 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 731139 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 731198 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| || || | || |||| ||||| Sbjct 731199 GCAGGCACGGTCACTACAGCATTTGTTAC 731227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780523965509884