Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq265 194 2e-44 seq714 93.3 5e-14 seq2005 89.7 6e-13 >seq265 Length=606166 Score = 194 bits (214), Expect = 2e-44 Identities = 860/1339 (64%), Gaps = 32/1339 (2%) Strand=Plus/Minus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG 111763 ||||| |||||| | || || |||||||| || ||||| || || || ||||||| Sbjct 296985 GTTCACCCACGCCTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAG 296926 Query 111764 TTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGA 111823 || ||||| | || | ||||| || ||| | ||||| |||| |||||| | | Sbjct 296925 CTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCA 296866 Query 111824 ATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATG--TCAGA 111881 ||||||| |||||||||| |||||| || ||||| || || | || ||||| Sbjct 296865 GTGTGCCCTCATCTCAAAGTCGGCTGGAGGAATCGGCGTGGCGGTCA--GCTGCATCAGA 296808 Query 111882 GCCAACAAGTCTCGT-ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCT 111940 | ||| | | ||| || ||||| || | ||| | || | | || ||||| Sbjct 296807 TC-AACGGGGAGCTACATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCATGCT 296749 Query 111941 TCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG----GGAT 111996 | || | ||| ||| || || ||||| |||| | || | | ||| ||| Sbjct 296748 GAGAGTTTACAACAACACGGCACGTTATGTCGACCAGGGCGG-CAACAAAAGACCCGGAG 296690 Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056 | |||| | || || ||||| |||||| || | | || ||||| ||| || Sbjct 296689 CCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGA 296630 Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 ||| ||| | |||||| | || | | || || |||| ||| || ||||| || | Sbjct 296629 AGAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCCG 296570 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACA 112173 | | |||||||||||||| ||| || | | |||||||| | ||||| | Sbjct 296569 ACTTGTTCATGAAGAGAGT---GGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATG 296513 Query 112174 AGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTAC 112232 || ||||| || ||| || | ||||||||||||||| |||||||| || Sbjct 296512 AGTGTCCCGGGCTGGACGAGTGTTG-GGGTGAGGAGTTTGAGAAGCTCTACACTTCATAT 296454 Query 112233 GAGGAAGAAAGTCGGGCGACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT 112291 ||| | || | ||| | ||| |||| ||| | |||||| | || ||| | Sbjct 296453 GAGAAGGAGGGGAGGGTCAA-GCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTAT 296395 Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 | |||| || || || || || || || || ||||| |||||||||||||| |||| ||| Sbjct 296394 CGAGTCCCAGACAGAAACCGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAA 296335 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| || || ||||| |||| ||||| || ||||||||| ||||||||| | || Sbjct 296334 GAGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCAACCTCTGCACAGAAATCGTTGA 296275 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 || || | | || ||| || || ||||| || || || ||||| ||| || ||| Sbjct 296274 ATACACCAGCGACGACGAGGTAGCGGTCTGTAATCTGGCCTCCATCGCCCTCAACATGTA 296215 Query 112472 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 112531 || || ||| ||| ||||| | | ||||||| || || ||| | Sbjct 296214 CGTCACCCCTGAG---CGGACTTTTGACTTTAAAAAACTAGCATCCGTGACCAAAGTCAT 296158 Query 112532 CACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA 112591 | |||||| | |||| | || || | || || || || || || || Sbjct 296157 CGTCAAAAACTTGAACAAGATCATCGAGATTAACTTCTATCCAGTGCCCGAAGCGGAGAA 296098 Query 112592 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 || || | | | ||| | || || || | || || |||||| | ||||||| ||||| Sbjct 296097 GTCCAACAAGCGCCACAGGCCGATAGGAATTGGCGTTCAAGGTTTGGCGGATGCCTTCAT 296038 Query 112652 TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGA 112711 || || || | ||||| | ||| ||| || | || | |||||||| Sbjct 296037 CCTGATGCGTTACCCGTTTGAAAGCCCCGAGGCGCAGCTGCTGAACATCCAAATATTTGA 295978 Query 112712 GACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATA 112771 ||| || || ||||||| || |||||||| | ||| |||| | | || || || Sbjct 295977 GACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTA 295918 Query 112772 TGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAA 112829 || || | || || ||||| | ||| |||||| | || || | || ||||||| | Sbjct 295917 CGAGACGTACGAAGGCTCTCCGG--TCAGCAAGGGCATCCTCCAGTACGACATGTGGG-A 295861 Query 112830 GGTGA-GACCAAGCTTCACTACGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGG 112887 | || | ||| || | |||| ||| ||| || || || ||| | | | Sbjct 295860 GAAGACGCCCACCGATCTGTTGGACT-GGAAGCTGCTGAAAGAGAAGATCGCCAAACATG 295802 Query 112888 GTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGG 112947 | | | ||||| || || |||| || ||||| || |||||||||||||| ||| ||| Sbjct 295801 GCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCACAGATCCTGG 295742 Query 112948 GTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGG 113007 | || || || | | ||| ||||||| | |||||||| | ||| |||| | | Sbjct 295741 GCAACAACGAGTCTATCGAAGCCTACACCAGCAACATCTACACCCGCAGAGTCCTCTCTG 295682 Query 113008 GAGAGTTTGTGATTGTCAA 113026 |||||||| ||| || || Sbjct 295681 GAGAGTTTCAGATCGTGAA 295663 >seq714 Length=827726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||| ||||| | || || || || ||||||||||||||||| || || ||| || Sbjct 573855 GAGAGACTCGTGGCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCC 573796 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || ||||||||||||||| |||| || ||||| ||||| ||||||||| ||||| || Sbjct 573795 ATCTATTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTTACCTTCTCCAATGAGCTGAT 573737 >seq2005 Length=666128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 130742 GTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGGC 130801 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 130802 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 130850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620695735690080