Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq265 233 2e-56 seq1140 95.1 1e-14 seq714 84.2 3e-11 >seq265 Length=606166 Score = 233 bits (258), Expect = 2e-56 Identities = 964/1491 (65%), Gaps = 42/1491 (3%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| || | | ||| || || || | | || || |||| ||||| || || Sbjct 295608 CTTCATCTCTTCGCTCCACAGCCCCTGCTCCGTCAGGTCTTTGAGCAGATGAGGATTCAC 295667 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| ||| | |||||||| | ||||||| ||| | Sbjct 295668 GATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 295727 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 295728 AGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 295787 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || ||| || || || | | |||||| | || Sbjct 295788 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGCTTCCAGTCCAACA-GAT 295846 Query 106081 C--TTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAAC 106136 | | || || || ||||||| || | || || | |||||| ||| ||||| | Sbjct 295847 CGGTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACC--GGAGAGC 295903 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | || | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 295904 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 295963 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || ||||| ||||| || | |||| | || || || ||||| | Sbjct 295964 CGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACG 296023 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || || || || ||||||| | ||||||||| || | || || || |||| Sbjct 296024 GGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCAATTCCTATCGGCCTGT 296083 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 | ||| | || ||||| ||| || ||||| || || | || |||| || Sbjct 296084 GGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGT 296143 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAAAAGTGC 106433 | | |||||| || || | || | | ||| ||||||| | | |||||||| | Sbjct 296144 TCAAGTTTTTG---ACGATGACTTTGGTCACGGATGCTAGTTTTTTAAAGTCAAAAGTCC 296200 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | ||| |||| ||| | |||||||| || |||| ||| || || || || Sbjct 296201 G---CTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGACCGCTACCT 296257 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 | || | ||||| || | |||||||| || | |||| || || || || |||| Sbjct 296258 CGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCA 296317 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||| ||||| |||||| |||||| || || ||||| |||||||| ||||| || | Sbjct 296318 GATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGG 296377 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG 106672 | || ||||| |||| || ||| || | |||||| | | | | || || || ||| Sbjct 296378 TTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACACGC-TTG 296436 Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA-CCCACCGCGTC 106731 ||| |||||| ||| || |||||||| |||||||||||| |||| | | || Sbjct 296437 ACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACAC-TC 296495 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCAAC 106788 | || || || || | ||||| | |||||||| ||| | ||| || Sbjct 296496 GTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---AC 296552 Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 106848 | ||||||||| | ||| || |||||||||| | || || ||||| || ||| Sbjct 296553 TCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTC 296612 Query 106849 TTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 || | ||| ||| || | | ||| ||||| || | | || |||||| |||| Sbjct 296613 CTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCACGGCT 296671 Query 106908 CAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCT 106963 | || || | |||| | ||| |||| | | || | || | ||||| || || Sbjct 296672 CCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG-CCGCCCTGGTCGACATAACGTGCC 296730 Query 106964 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 107023 ||| ||| | || | ||||| || | | || | ||| | || ||||| || | Sbjct 296731 GTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCA 296790 Query 107024 ATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCCCAC 107080 || || | | | ||| | || | || || || || || |||||| || Sbjct 296791 AT-GTAGCTCCCCGTTGATCTGATGCAGC--TGACCGCCACGCCGATTCCTCCAGCCGAC 296847 Query 107081 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 107140 |||||||| | ||||||| | | ||||| | ||||| || | ||| ||| ||||| Sbjct 296848 TTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTC 296907 Query 107141 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 107200 |||||| |||||||| ||||||| ||| || || ||||| ||||||||||| || Sbjct 296908 ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTA 296967 Query 107201 GGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 107259 || | ||||| ||||| || | | |||| | || ||| ||||| | | | | || Sbjct 296968 GGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTC 297026 Query 107260 AATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 ||||| | ||||||||| | || || | ||| | ||||| ||||| Sbjct 297027 GATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGG 297077 >seq1140 Length=734468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||||| || ||||| |||| |||| || || || |||| |||| ||| Sbjct 320375 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 320434 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||| ||||||||||| |||||||| || || ||||| |||||||| Sbjct 320435 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGA 320494 Query 106625 GACTTGAGAATTGCCTTCCACA 106646 |||| || || || | ||||| Sbjct 320495 GACTCGATGATGGCATACCACA 320516 >seq714 Length=827726 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| || ||||| |||||| || || ||||| || || | ||||| Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 | | |||||| || || |||||| || |||||||||||||||||||| Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCAC 573831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589936448193360