Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1833 147 5e-30 seq1532 129 1e-24 >seq1833 Length=1844611 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| |||| ||||| | || ||||| Sbjct 459693 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTCT 459634 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||||||||| ||||| || ||||| || Sbjct 459633 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 459574 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||||||||| ||||| || ||||| | |||||| Sbjct 459573 ATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTT 459514 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 459513 CCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| |||| || || | ||||| ||| Sbjct 459465 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 459406 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || || || ||||||||||| ||||| || || || || Sbjct 459405 AGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGG 459346 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| ||||| || | ||| | |||||| Sbjct 459345 ATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTT 459286 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 459285 CCAGTCAAGGTCTTCACAAAGATCTGCAT 459257 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| |||| || || | ||||| || Sbjct 459921 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 459862 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || || || ||||||||||| ||||| || || || || Sbjct 459861 AGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGG 459802 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| ||||| || ||||| | |||||| Sbjct 459801 ATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTT 459742 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 459741 CCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 >seq1532 Length=669350 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| |||| || || Sbjct 291146 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 291205 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||| || || || ||||| || | || | ||| || ||||||||| Sbjct 291206 CGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGAATGCCT 291265 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| || || || ||||||||||||||||||||| || || || ||| Sbjct 291266 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGG 291325 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | || || ||||| | ||||| Sbjct 291326 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 291366 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| |||||||| || || |||||||| |||| || || | |||||||| Sbjct 291386 ACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATCTTCA 291445 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 291446 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 291505 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || ||||||||||||||||| || || || ||||| | ||||| Sbjct 291506 ATTTTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 291565 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 291566 CCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| |||||||| || || || ||||| |||| || || | |||||||| Sbjct 291614 ACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCA 291673 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || ||||||||||| || || || Sbjct 291674 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 291733 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||| || || |||||||| | ||||| Sbjct 291734 ATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTG 291793 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 291794 CCGGTGAGGGTCTTGACAAAGATCTGCAT 291822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109396109588738