Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq402 188 6e-42 seq1586 127 2e-23 seq1864 114 1e-19 seq1532 113 4e-19 seq1253 113 4e-19 seq403 113 4e-19 >seq402 Length=1600201 Score = 188 bits (208), Expect = 6e-42 Identities = 453/680 (67%), Gaps = 4/680 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 |||||||| |||||||| || | | || || || | || || | | |||| | Sbjct 1359868 ACTGCTTGTGAAAGAGCAAAGAGGACCCTGTCCTCCAGCACCCAGGCTAGCCTTGAGATT 1359809 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | |||||||| || || | | || | || | ||||| ||||| || Sbjct 1359808 GACTCTCTGTTTGAGGGTATCGACTTCTACACCTCAATCACAAGGGCACGCTTTGAGGAG 1359749 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTC 552091 | || || ||||| || |||| | || ||||| || |||| | | |||| | Sbjct 1359748 CTCAACTCAGAGCTCTTCAGGGGAACACTGGATCCAGTTGAG-AAGTCTCTGCAAGATGC 1359690 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||| ||||| | ||||||||||| || |||||||| || ||||||||||| Sbjct 1359689 CAAGCTGGATAAGTCCAAGATCCATGAAATTGTCCTGGTTGGTGGCTCCACAAGAATTCC 1359630 Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | || || ||| ||| ||||| | | |||| || | || | | Sbjct 1359629 CAAAATCCAGAAGCTCTTGCAGGACTTTTTT-AATGGCAGAGAATTGAACAAGAGCATCA 1359571 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| ||||||||||| ||| | || || ||||| || || | | Sbjct 1359570 ACCCAGATGAAGCTGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTGATGGGTGACA 1359511 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 || ||||| | ||| || | |||| | ||||| ||||||| ||||| || | | Sbjct 1359510 CTTCAGAAAATGTCCAAGATTTGCTACTGCTGGATGTGGCTCCTCTGTCTCTGGGCATTG 1359451 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 | || | || || ||||||| | | ||| | |||| || || || || || Sbjct 1359450 AGACTGCGGGTGGAGTTATGACACCTTTAATCAAACGAAACACCACCATCCCCACCAAGC 1359391 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | | | | || ||||| ||||||||||| || | | ||| ||||| | | || Sbjct 1359390 AGACCCAGATCTTCTCTACATATTCAGATAACCAGCCAGGTGTGCTGATTCAGGTGTATG 1359331 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 | || || ||| | || || || || || | ||||| | ||| | | ||||| Sbjct 1359330 AGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTTGGCAAGTTTGAGCTCACAGGTA 1359271 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||||||||| || || || || || | || || || ||||| || |||||||||| Sbjct 1359270 TCCCTCCTGCTCCCCGAGGTGTCCCACAGGTGGAGGTAACCTTCGACATTGATGCCAATG 1359211 Query 552571 GAATTTTGAATGTGACTGCT 552590 ||||| |||||||| | ||| Sbjct 1359210 GAATTCTGAATGTGTCCGCT 1359191 Score = 149 bits (164), Expect = 5e-30 Identities = 387/587 (66%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 549990 TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTA 550049 || |||| || || ||| | || ||||| ||| |||||| || |||| || |||| | Sbjct 1360647 TATCTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGGGTTTTCCAGCATGGCA 1360588 Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109 |||| || || || ||||| || || || |||||||| ||||| ||||| | || | Sbjct 1360587 AAGTGGAGATAATCGCCAACGACCAGGGAAACAGAACCACTCCCAGCTATGTGGCCTTTA 1360528 Query 550110 CGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTA 550166 | || || || | |||| ||||| || || |||| | ||| || || || Sbjct 1360527 CTGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAATCAGGTTGCCA-TG--AACCCCG 1360471 Query 550167 CCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTC 550226 |||| || || |||||||| || || | || || |||| |||| || | ||| | Sbjct 1360470 CCAACACAATCTTTGATGCCAAGCGGCTCATCGGGAGAAAGTTTACCGACCCTGTTGTCC 1360411 Query 550227 AGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTG 550286 || | || ||||||| ||||| ||| || | | | || | |||||||| | | Sbjct 1360410 AGTCTGACATGAAGCTCTGGCCCTTCAAAGTGATCAGTGATAGCGGAAAACCCAAAGTCC 1360351 Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| | || |||| ||| || | |||||| |||| || || ||||| Sbjct 1360350 AAGTTGAGTATAAAGGGGAGACCAAAGCCTTCTACCCAGAAGAAATCTCCTCCATGGTCC 1360291 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | |||||||| | | || || | | || ||| |||| | | ||||| | Sbjct 1360290 TGGTTAAAATGAAGGAGATCGCTGAAGCCTACCTGGGACAAAAAGTGTCAAACGCAGTCA 1360231 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || ||||| |||||||| ||||| || | ||||| || || || ||||| | Sbjct 1360230 TCACAGTTCCAGCGTATTTTAACGACTCCCAGAGGCAAGCCACCAAGGACGCTGGGGTGA 1360171 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | ||||||| |||||||| | || ||||||||||| || || || || | || || | Sbjct 1360170 TCTCTGGACTGAATGTTCTGAGGATCATCAATGAACCCACAGCAGCAGCCATCGCCTACG 1360111 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | || |||||| ||| || | || || |||||||||||| Sbjct 1360110 GCCTGGATAAAGGTAAAAGAGGGGAGCGCAACGTGCTCATCTTTGAT 1360064 >seq1586 Length=1120755 Score = 127 bits (140), Expect = 2e-23 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| |||||||||| Sbjct 832068 ATGCAGTTATTACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 832127 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| |||||||| || || || |||||||| || |||||||| || Sbjct 832128 CTGGAACCATTGCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCAACTGCTGCAGCCA 832187 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 832188 TTGCTTATGGCCTGGACAAA 832207 >seq1864 Length=629617 Score = 114 bits (126), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 550395 CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAG 550454 || |||| || || || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 365745 CGAATGCTGTTATCACAGTACCTGCATACTTTAATGATTCTCAACGTCAAGCAACCAAGG 365686 Query 550455 ATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTG 550514 |||||||| || |||| || || ||||| ||||| |||||||| || || ||||||| Sbjct 365685 ATGCTGGAACCATCTCTGGCCTCAACGTTCTGCGTATCATCAATGAGCCAACCGCTGCTG 365626 Query 550515 CACTTGCATATGG 550527 | |||| ||||| Sbjct 365625 CTATTGCTTATGG 365613 >seq1532 Length=669350 Score = 113 bits (124), Expect = 4e-19 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||||||||| ||| | ||| |||||||| || | || Sbjct 291373 CCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGG--ATATTGTAGTCGGAGAGG 291430 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||||||| ||||| |||||||| || || || ||||| ||||| ||||| Sbjct 291431 GTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATG 291490 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || ||||| ||| || |||||| || || || | | || Sbjct 291491 CCTTCCTTGTCCTGGATTTTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCC 291550 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || || |||||||| || || ||||| || |||||| Sbjct 291551 AGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATA 291595 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || |||||||||||||| ||| | ||| || ||||| || | || Sbjct 291601 CCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGG 291658 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||||||| ||||| |||||||| || || || ||||| ||||| ||||| Sbjct 291659 GTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATG 291718 Query 563371 CCTTCTTTATCTTGAATTTT 563390 ||||| ||||| || || || Sbjct 291719 CCTTCCTTATCCTGGATCTT 291738 >seq1253 Length=6611 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | || || || || || || |||||||| || || || ||||| ||||||| Sbjct 5486 ATGCTGTAGTGACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACCAAAGATG 5427 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 5426 CAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCTGCTGCTA 5367 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| ||||| ||| Sbjct 5366 TTGCTTATGGCCTTGACAAA 5347 >seq403 Length=2440063 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | || || || || || || |||||||| || || || ||||| ||||||| Sbjct 729435 ATGCTGTAGTGACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACCAAAGATG 729376 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 729375 CAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCTGCTGCTA 729316 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| ||||| ||| Sbjct 729315 TTGCTTATGGCCTTGACAAA 729296 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | || || || || || || |||||||| || || || ||||| ||||||| Sbjct 731220 ATGCTGTAGTGACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACCAAAGATG 731161 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 731160 CAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCTGCTGCTA 731101 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| ||||| ||| Sbjct 731100 TTGCTTATGGCCTTGACAAA 731081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028977952556860