Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1327 161 8e-35 seq657 100 2e-16 >seq1327 Length=1883937 Score = 161 bits (178), Expect = 8e-35 Identities = 140/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 831687 AGTCCGGTGATGTGTGCGATCATGTAGGTAAGAAGCGCATAGCTGGCGATATTGAAAGGC 831746 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| |||||||| || || | |||||| ||||||||||| ||||| || |||| | Sbjct 831747 ACCCCGAGGCCCATGTCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 831806 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| |||||||||| || |||||| || || |||||||||| | || |||| Sbjct 831807 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTCT 831860 Score = 138 bits (152), Expect = 9e-28 Identities = 135/173 (78%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| ||||||||||| || || || ||||||||||| |||||||| ||||||||||| Sbjct 832532 CATGTTTGTGTACTCTGCCCCAAAGTGTCTCCACTGGAAACCGTACACGGGTCCCAGGTC 832591 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || || | | ||| || ||||||| ||||||| || |||||||| || Sbjct 832592 GCCTTCCTCTCTATCCGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCTTC 832651 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||| ||||| || || ||||| |||||||| |||| ||||| || || |||| Sbjct 832652 CCAAATCTTCACTCCTTTCTCAGAGAGCTCCTTGGCATTTGTTGATCC-CTGA 832703 >seq657 Length=859816 Score = 100 bits (110), Expect = 2e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 112261 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACG 112320 ||||| |||||||||| ||||| | ||| ||||||||||| |||| ||| |||||||| Sbjct 54386 AGTCTAACAGGATGCCATGGCAGCTTTCCATTGTTCCCGATACCCAGGTCAGGACACACC 54445 Query 112321 GCCACGATACCGTTCAGAATGAGGG 112345 ||||| ||||||||||||||| ||| Sbjct 54446 GCCACAATACCGTTCAGAATGCGGG 54470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408587650117622