Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq265 298 1e-75 seq2005 120 6e-22 seq1140 86.0 1e-11 >seq265 Length=606166 Score = 298 bits (330), Expect = 1e-75 Identities = 986/1507 (65%), Gaps = 52/1507 (3%) Strand=Plus/Plus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGC 221416 |||||| || ||||||| ||||||||| ||| | ||||| | |||| | | Sbjct 295894 ACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCC 295953 Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||||| |||| ||||||||||||||| || |||| || || |||||||| Sbjct 295954 TCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCCTCGGG- 296012 Query 221477 GAAGTGAA--GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 | | || ||| | ||||| || ||| | || |||| || || || || || | Sbjct 296013 GCTTTCAAACGGGTA-ACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCAATTC 296071 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 | || |||||||| | | ||||||| ||||||| ||||| ||||| ||||| | | Sbjct 296072 CTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCT 296131 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA--GCTTCTGGTG 221652 |||| | ||||| | ||| ||||||||| ||||| | | || || Sbjct 296132 CGATGATCTTGTTCAAGTTTTTGACGATGACTTT---------GGTCACGGATGCTAGTT 296182 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 || || ||| |||| || |||||| | | | | || ||||| | | Sbjct 296183 TTTTAAAGTCAAAAGTCCGC--TC----AGGGGTGACGTACATG--TTGAGGGCGATGGA 296234 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| ||||| || || |||||||| | | |||| || | | ||| ||||| ||||| Sbjct 296235 GGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAG 296294 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||||||| ||||| || ||||| | | || || ||| || ||| ||||| || Sbjct 296295 GTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTT 296354 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || ||| || || ||| | | | | ||| || ||| | | Sbjct 296355 GTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTG 296414 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 ||| || ||||| | |||||| ||||| ||| ||||| || |||||| Sbjct 296415 -CTGAGCCTTCACCACACGCTTGACCCTCCCCTC---CTTCTCATATGAAGTGTAGAGCT 296470 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | ||||||| ||||| | ||||||||| || |||||| ||||||||||||| Sbjct 296471 TCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAG 296530 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| | |||| || || |||| |||||| | ||| ||||||||||| || | | Sbjct 296531 ACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGA 296590 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | || ||||||| || |||||||||| || |||| ||| |||| |||| || |||| Sbjct 296591 AAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAA 296650 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | |||| ||||||||||||||| || | ||| | || ||||||| |||||||| | Sbjct 296651 ACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGC 296710 Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 |||| || | ||| | | | | |||| | | | || | || || | ||||| Sbjct 296711 CCTGGTCGA-CATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTT 296769 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCTCAGGTTACTGGCAGACA 222308 || ||||| ||||| |||||| || || ||| | || | | ||| | | || Sbjct 296770 GAGTTGCCGTTTGTGCCGGCAATGTA-GCTCC-CCGTTGATCTGATGCAGCTGACCGCCA 296827 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 |||||| || || || || ||||| | ||| || ||| |||||||| ||||| Sbjct 296828 CGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGC 296887 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 | || || ||| ||||| | | ||||| || || |||| ||||| || ||| Sbjct 296888 CTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGG 296947 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 || ||| || || || || || |||||| || || | | |||| ||| | || Sbjct 296948 TACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGT 297007 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | | || | |||||| | ||| || | || |||||| || Sbjct 297008 AGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCA 297067 Query 222549 TGTACTGGGGCC--TC-TCCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 ||| |||||| | || |||| || || || || |||||||| || |||| Sbjct 297068 TGTGCTGGGGACGTTCGGCCACTTTGCCGTT-GATCT--TCAGCAGGTAGGACCGCTCCA 297124 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCA 222665 |||||||||| |||||| ||||| | ||||| | | || || | ||||| || | Sbjct 297125 GAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTTGA 297184 Query 222666 GCTCCGACTTGTGCTTTAC-GCTCAA-CTCGAAAAAGCG----CTCAGACACGAGGGGAG 222719 | | | ||| || | | | | ||| ||| |||| || || | | ||||| Sbjct 297185 G-GCGGTCTT-TGTTCTCCTGGACAATGTCG----AGCGTCTCCTTGGAGATCATGGGAG 297238 Query 222720 CGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAACG 222779 || |||| | |||||| |||| || |||||| | | ||| | || |||| Sbjct 297239 AGTGGCGTTTGTTCAAGGGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACA 297298 Query 222780 TGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGT 222839 | |||| |||||||| || || ||||||||||||| || | ||| |||||| Sbjct 297299 CCTTCTTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGT 297358 Query 222840 CAGGGTG 222846 | ||||| Sbjct 297359 CGGGGTG 297365 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 || || |||||| | | |||| | | |||||| || |||| || ||| ||| | Sbjct 295582 GATCCGTTGTTGCCGATGAGCTTGTTCTTCATCTCTTCGCTCCACAGCCCCTGCTCCGTC 295641 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || | |||| || || ||||| | || || ||||| ||||| || || | | Sbjct 295642 AGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTG 295701 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| | Sbjct 295702 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 295761 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 || |||||||| || |||| |||||| ||||| Sbjct 295762 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTT 295793 >seq2005 Length=666128 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || || |||||||| ||||| ||| ||||| || || Sbjct 130715 GGAGAGCGCGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 130774 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 130775 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 130834 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 130835 ATCAGCAGAGACGAGG 130850 >seq1140 Length=734468 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||| ||||||||||| | ||| | ||| ||| | || || ||| Sbjct 319430 ACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 319489 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || ||| || ||||||||||| |||| ||||| Sbjct 319490 GACTCGTTGTTGCCCAGGATCTGTGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGG 319549 Query 221243 CTGTT 221247 ||||| Sbjct 319550 CTGTT 319554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928774974092160