Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq402 161 6e-34 seq1586 116 2e-20 seq1864 113 3e-19 seq1253 98.7 6e-15 seq403 98.7 6e-15 >seq402 Length=1600201 Score = 161 bits (178), Expect = 6e-34 Identities = 368/552 (67%), Gaps = 4/552 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||| | || || || || |||||| | |||| || ||| Sbjct 1360650 GAATATCTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGGGTTTTCCAGCATG 1360591 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || ||||| ||||| ||||| || || ||||| || || ||||| | | Sbjct 1360590 GCAAAGTGGAGATAATCGCCAACGACCAGGGAAACAGAACCACTCCCAGCTATGTGGCCT 1360531 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || |||||||||||||| || |||| | ||| || || | Sbjct 1360530 TTACTGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAATCAGGTTGCCATGAACCCCG 1360471 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| || | | || || | || ||| || | ||||| Sbjct 1360470 CCAACACAATCTTTGATGCCAAGCGGCTCATCGGGAGAAAGTTTACCGACCCTGTTGTCC 1360411 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | ||||| ||| | ||||| || || ||||| | || | | || ||||| | | Sbjct 1360410 AGTCTGACATGAAGCTCTGGCCCTTCAAAGTGATCAGTGATAGCGGAAAACCCAAAGTCC 1360351 Query 474624 AAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 ||| | || | ||| || || ||| || | || ||| |||| || || ||||| Sbjct 1360350 AAGTTGAGTATA--AAGGGGAGACCAAAGCCTTCTACCCAGAAGAAATCTCCTCCATGGT 1360293 Query 474682 TTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | |||||||| | | ||| | || || |||||| |||| | | ||||| Sbjct 1360292 CCTGGTTAAAATGAAGGAGATCGCTGAAGCCTACCTGGGACAAAAAGTGTCAAACGCAGT 1360233 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || |||||||| |||||||| || || || | ||||| || || || || || Sbjct 1360232 CATCACAGTTCCAGCGTATTTTAACGACTCCCAGAGGCAAGCCACCAAGGACGCTGGGGT 1360173 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || | || || |||||| | | || || |||||||| |||||||| || | || || Sbjct 1360172 GATCTCTGGACTGAATGTTCTGAGGATCATCAATGAACCCACAGCAGCAGCCATCGCCTA 1360113 Query 474862 TGGTCTTGATAA 474873 || || ||||| Sbjct 1360112 CGGCCTGGATAA 1360101 Score = 150 bits (166), Expect = 1e-30 Identities = 447/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 |||||||||||| | || ||| | | || || || || || ||| |||| || Sbjct 1359868 ACTGCTTGTGAAAGAGCAAAGAGGACCCTGTCCTCCAGCACCCAGGCTAGCCTTGAGATT 1359809 Query 475556 GATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAAATTTGAAGA 475614 || ||||| ||||| || || || || || ||| || |||||||| ||||| || Sbjct 1359808 GACTCTCTGTTTGAGGGTATCGACTTCTACACCTCA-ATCACAAGGGCACGCTTTGAGGA 1359750 Query 475615 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT-TCTCAGAGATT 475673 | || || ||||| || |||| | || || ||||| |||| ||| |||| Sbjct 1359749 GCTCAACTCAGAGCTCTTCAGGGGAACACTGGATCCAGTTGAG-AAGTCTCTGCAAGATG 1359691 Query 475674 CTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATT 475732 | || || || || || |||| ||||||||||||| || || || || || ||||||||| Sbjct 1359690 CCAAGCTGGATAAGTC-CAAGATCCATGAAATTGTCCTGGTTGGTGGCTCCACAAGAATT 1359632 Query 475733 CCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGT 475791 || ||||| |||| ||| || | | ||||||||| | | | || || | || | Sbjct 1359631 CCCAAAAT-CCAGAAGCTCTTGCAGGACTTTTTTAATGGCAGAGAATTGAACAAGAGCAT 1359573 Query 475792 AAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCA 475851 || || ||||||||||| || ||||| || || ||||| || ||||| | ||| | Sbjct 1359572 CAACCCAGATGAAGCTGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTGATGGGTGA 1359513 Query 475852 ATCAGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 || ||||| | || ||| |||| | || || |||| || || | || Sbjct 1359512 --CACTTCAGAAAATGTCCAAGATTTGCTACTGCTGGATGTGGCTCCTCTGTCTCTGGGC 1359455 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 |||| || | || || ||||||| | | || | |||| || | ||||| | Sbjct 1359454 ATTGAGACTGCGGGTGGAGTTATGACACCTTTAATCAAACGAAACACCACCATCCCCACC 1359395 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 || | | | | || || || ||||| ||||| || || ||| || || | Sbjct 1359394 AAGCAGACCCAGATCTTCTCTACATATTCAGATAACCAGCCAGGTGTGCTGATTCAGGTG 1359335 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | ||| ||||| ||| | || || || || ||| ||||| | ||| | || | Sbjct 1359334 TATGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTTGGCAAGTTTGAGCTCACA 1359275 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| |||||||||||| |||| || || || | || || || || || |||||||| Sbjct 1359274 GGTATCCCTCCTGCTCCCCGAGGTGTCCCACAGGTGGAGGTAACCTTCGACATTGATGCC 1359215 Query 476150 AATGGTATTCTTAATGT 476166 ||||| ||||| ||||| Sbjct 1359214 AATGGAATTCTGAATGT 1359198 >seq1586 Length=1120755 Score = 116 bits (128), Expect = 2e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| ||||| ||||| || || || ||||| || || |||||||| |||||||||| Sbjct 832068 ATGCAGTTATTACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 832127 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || |||||||| | || || || ||||| ||||| || || || Sbjct 832128 CTGGAACCATTGCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCAACTGCTGCAGCCA 832187 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| || || || || Sbjct 832188 TTGCTTATGGCCTGGACAAAAA 832209 Score = 96.9 bits (106), Expect = 2e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || || ||||| | || || | ||| | || || Sbjct 833282 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATTCTGGGCAAATTTGAGCTGACCGG 833341 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| ||||| |||||||| || ||||| ||||| || || ||||| |||||||| || Sbjct 833342 TATTCCACCTGCACCCAGAGGTGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 833401 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 833402 TGGCATTCTCAATGTATCTGC 833422 >seq1864 Length=629617 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || ||||| |||||||||||||||||||||||||| || |||| Sbjct 365742 ATGCTGTTATCACAGTACCTGCATACTTTAATGATTCTCAACGTCAAGCAACCAAGGATG 365683 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | || || || ||| | ||||| || ||||| ||||| || || || Sbjct 365682 CTGGAACCATCTCTGGCCTCAACGTTCTGCGTATCATCAATGAGCCAACCGCTGCTGCTA 365623 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | || ||||| Sbjct 365622 TTGCTTATGGGTTGGACAAGAA 365601 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| ||||||||||| || || || || || || || || ||||| || |||| |||| Sbjct 378599 ATGCTGTAATTACTGTACCCGCCTACTTCAACGACTCCCAGCGTCAGGCCGCTAAGGATG 378658 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | || || || ||| | ||||| || ||||| ||||| || || || Sbjct 378659 CTGGAACCATCTCTGGCCTCAACGTTCTGCGTATCATCAATGAGCCAACCGCTGCTGCTA 378718 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | || ||||| Sbjct 378719 TTGCTTATGGGTTGGACAAGAA 378740 >seq1253 Length=6611 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| |||| ||| | || || || || || || ||||| ||||| || || || || Sbjct 5493 GTAACAAATGCTGTAGTGACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACC 5434 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||| | || || ||||| | ||||| || ||||||||||| || Sbjct 5433 AAAGATGCAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCT 5374 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| ||||| || || Sbjct 5373 GCTGCTATTGCTTATGGCCTTGACAAAAA 5345 >seq403 Length=2440063 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| |||| ||| | || || || || || || ||||| ||||| || || || || Sbjct 729442 GTAACAAATGCTGTAGTGACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACC 729383 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||| | || || ||||| | ||||| || ||||||||||| || Sbjct 729382 AAAGATGCAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCT 729323 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| ||||| || || Sbjct 729322 GCTGCTATTGCTTATGGCCTTGACAAAAA 729294 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| |||| ||| | || || || || || || ||||| ||||| || || || || Sbjct 731227 GTAACAAATGCTGTAGTGACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACC 731168 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||| | || || ||||| | ||||| || ||||||||||| || Sbjct 731167 AAAGATGCAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCT 731108 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| ||||| || || Sbjct 731107 GCTGCTATTGCTTATGGCCTTGACAAAAA 731079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267921230360072