Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq649 116 4e-21 >seq649 Length=1139610 Score = 116 bits (128), Expect = 4e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | |||||||||||| || ||| ||||| || || ||| | |||| | | Sbjct 925706 CATGCAGTTCAAATCTGCCTGCACCCGAGACCATGAAGCATATACCACGCTTTCTAATCT 925647 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828 ||||| | ||| |||||| || || || | ||| || |||| || | || | Sbjct 925646 GCTGGCTATAAACACGTTAGGAAAGCAGGAGATAATTGCCCCCACTGCTATCCTAAATGT 925587 Query 160829 CTTATCCGCCTTT-CGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || | | ||| | |||||| ||||| ||||| | ||||||||| || || || || | Sbjct 925586 -TTCTGAGGATTTCCTGTCCACATGCACACAATAGATGTTCTGAGGAGCATAAATAGCTC 925528 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 || | | ||| |||||||| ||||| | |||||| || || ||||| || || |||| Sbjct 925527 GTAGAAGTCGCTCAAACATCTCAATCTTCTCATGGATTACCATCGAGTAAGCAATTGGAA 925468 Query 160948 ACTCGGTCTCCTC 160960 | || ||||||| Sbjct 925467 AGTCTTTCTCCTC 925455 Score = 111 bits (122), Expect = 2e-19 Identities = 240/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 160609 TCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTA 160668 ||||| || || |||||| || || |||| || ||||| || || || ||| | Sbjct 929846 TCAGCGCCTGAACCATCTCTCTATTGGTTTTGATGGGGAAGTCTGTCCCACAGGTGTTAA 929787 Query 160669 TCACGTACTTCCATTTCGCGC-TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCC 160727 || |||| |||| | | | || || |||| || |||||| || | ||||||| Sbjct 929786 GCAGGTACCTCCACTGGATGTGTGAGCTCA-GCAGATCTTCCATGCAGTTCAAATCTGCC 929728 Query 160728 TGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTA 160787 ||||| || ||| ||||| || || ||| | |||| | | ||||| | ||| || ||| Sbjct 929727 TGCACCCGAGACCATGAAGCATATACCACGCTTTCTAATCTGCTGGCTATAAACACATTA 929668 Query 160788 TCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTT-CGGTC 160846 || || || | ||| || |||| || | || | || | | ||| | ||| Sbjct 929667 GGAAAGCAGGAGATAATTGCCCCCACTGCTATCCTAAATGT-TTCTGAGGATTTCCTGTC 929609 Query 160847 CACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACAT 160906 ||| ||||| ||||| | ||||||||| || || || || | || | | ||| ||||| Sbjct 929608 CACATGCACACAATAGATGTTCTGAGGAGCATAAATAGCTCGTAGAAGTCGCTCAAACAT 929549 Query 160907 CTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||| ||||| | |||||| || || ||||| || || || || || ||||||| Sbjct 929548 CTCAATCTTCTCATGGATTACCATCGAGTAAGCAATGGGGAAGTCTTTCTCCTC 929495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577175807546640