Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq265 212 7e-50 seq1140 87.8 2e-12 seq714 84.2 3e-11 >seq265 Length=606166 Score = 212 bits (234), Expect = 7e-50 Identities = 959/1491 (64%), Gaps = 42/1491 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| | | ||||||||| | ||||| || | | | Sbjct 297077 CCCCAGCACATGCTCATGAGGGTTTCCGTTGGCATCCACAGAACGGACATCGACGCAGCC 297018 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||||| | || || ||||| Sbjct 297017 ATTGAGACCTACAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCGCCTACTCTCTT 296959 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||||| ||||| || || ||| ||||||| |||||||| |||||| ||||| || Sbjct 296958 CAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGA 296899 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| | || ||||| | ||||| | | ||||||| | |||||||||| |||||| Sbjct 296898 CAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATCTCAAAGTCGGCTGG 296839 Query 75451 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 75507 || || || || || | || | ||| | | | || ||| || || Sbjct 296838 AGGAATCGGCGTGGCGGTCA--GCTGCATCAGATCAACGGGGAGCTAC-ATTGCCGGCAC 296782 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 ||| || | ||| | || | | || ||||| | || | ||| ||| || || || Sbjct 296781 AAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTA 296722 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 ||| | || | | ||| | ||| || || |||| | ||| |||| || |||| Sbjct 296721 TGTCGACCAGG-GCGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGC 296663 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 | || | | || ||||| ||| | | || ||| ||| | || ||| || Sbjct 296662 ACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAG-AACACAGGAAAGGAGGAGCAGAGG 296604 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 ||||| || || | |||||||||| || ||| | ||||||||| | || ||| Sbjct 296603 GCCAGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGAGT---GGAA 296547 Query 75743 GGTGGTCAA---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 | ||| |||||||| | ||||| | || || || || ||| | | || Sbjct 296546 AGCAACCAAGACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGA-GTGTTG 296488 Query 75800 GG-TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGAC 75858 || |||||||||||| |||||||| ||||| ||||||| || | ||| ||| Sbjct 296487 GGGTGAGGAGTTTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAGGGTCAA-GCGTG 296429 Query 75859 TGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 || || | | | | || ||| | || ||| || | || ||||| || || || || | Sbjct 296428 TGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGCACGC 296369 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | || ||||| ||||| || || || ||| ||||| ||||| ||||| |||| |||| Sbjct 296368 CGTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTGGGCACAA 296309 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 |||| ||| || || ||||| ||||| | || ||||| | || ||| || | Sbjct 296308 TCAAAAGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGACGACGAGGTAGCGG 296249 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTG 76097 | || ||| |||| || |||||||| | ||| |||| ||| || ||||||| Sbjct 296248 TCTGTAATCTGGCCTCCATCGCCCTCAACATGTACGTCACCCCTGAG---CGGACTTTTG 296192 Query 76098 ATTATGAAAAACT-TCAT--GAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 | | | ||||||| ||| | | || | || || |||||| | ||| ||| Sbjct 296191 ACTTTAAAAAACTAGCATCCGTGACCAAAGTCATCGT---CAAAAACTTGAACAAGATCA 296135 Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | || | || || ||||| || ||| ||||| || | ||| ||||| || | Sbjct 296134 TCGAGATTAACTTCTATCCAGTGCCCGAAGCGGAGAAGTCCAACAAGCGCCACAGGCCGA 296075 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATT 76274 | || | || ||||||||| | ||||||| || || || || ||| | ||||| Sbjct 296074 TAGGAATTGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGATGCGTTACCCGTTTGAAA 296015 Query 76275 CAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 || || || | |||| | || ||||| ||||| || |||| |||||| Sbjct 296014 GCCCCGAGGCGCAGCTGCTGAACATCCAAATATTTGAGACCATCTACTACGCCGCCCTGG 295955 Query 76335 AGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCG 76394 ||||||| || || |||| | | | || |||| ||||| | || || ||||| Sbjct 295954 AGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC-- 295897 Query 76395 CGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAACTAC 76450 ||| |||||| | || |||| || ||||||| || || || | | || | Sbjct 295896 GGTCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACCGATC-TGTTG 295839 Query 76451 GACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 76510 |||||| | | || || || ||| | | || | | ||||| || || || Sbjct 295838 GACTGGAAGCTGCTGAAAGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTG 295779 Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || || ||||| || |||||||||||||| ||| |||| || || || | | ||| | Sbjct 295778 GCCCCGATGCCCACGGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCTATCGAAGCC 295719 Query 76571 TACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAG 76630 ||||| | ||||||||| | ||| |||| | || |||||| || || || Sbjct 295718 TACACCAGCAACATCTACACCCGCAGAGTCCTCTCTGGAGAGTTTCAGATCGTGAATCCT 295659 Query 76631 CACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 || || |||| ||||| | | || || || ||| | | || |||||| Sbjct 295658 CATCTGCTCAAAGACCTGACGGAGCAGGGGCTGTGGAGCGAAGAGATGAAG 295608 >seq1140 Length=734468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 75829 GTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTA 75887 |||||| ||||||| || ||||| ||| || || | | | | | ||| | || | Sbjct 320563 GTATGAGAAGGAGGGCAGGGCCAA-GCGTGTGGTGAAGGCTCAGCAGCTGTGGTATGCCA 320505 Query 75888 TTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACA 75947 | || | || |||||||| || ||||| || || ||||||||||||||||| || || Sbjct 320504 TCATCGAGTCTCAGACGGAAACGGGAACCCCGTACATGCTTTACAAGGATGCCTGCAATG 320445 Query 75948 AGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTT 76007 |||||| ||||| |||| |||| || ||||| | || || ||||| || || Sbjct 320444 GGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATCCAGCAACCTGTGCACAGAGATCG 320385 Query 76008 TAGAGTACAC 76017 |||||||||| Sbjct 320384 TAGAGTACAC 320375 >seq714 Length=827726 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 |||||||||||||||||||| || |||||| || || |||||| | |||||| | || Sbjct 573831 GTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCCATCTATTGGCTCAAGAAGAGAGGG 573772 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 || ||||| || || |||||| ||||| || ||| | | ||||||| Sbjct 573771 CTAATGCCCGGTCTTACCTTCTCCAATGAGCTGATTAGCAGGGATGAGG 573723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596524752880320