Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq265 179 3e-40 seq1833 96.9 3e-15 seq1532 96.9 3e-15 seq464 82.4 7e-11 seq378 82.4 7e-11 >seq265 Length=606166 Score = 179 bits (198), Expect = 3e-40 Identities = 988/1558 (63%), Gaps = 67/1558 (4%) Strand=Plus/Plus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| || | || |||||| || || | | |||| || Sbjct 295640 TCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGG 295699 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | | || | || |||||||| ||||| ||||| || |||| Sbjct 295700 TGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGG 295759 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTT 138658 || || ||||| |||| || || |||| | || || ||| | Sbjct 295760 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCT 295819 Query 138659 CCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTA 138718 | || ||| | ||||||| ||| |||| | || | || | |||||| |||||||| | Sbjct 295820 CTTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGA 295879 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 || ||| || | ||| ||||||||||| ||||| || | ||| |||| Sbjct 295880 GGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCA 295939 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 |||| ||||||||| || || | ||||| || || || || || || |||| Sbjct 295940 GCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCA 295999 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 | ||||||| ||| || |||| || | || |||| || || |||| |||| Sbjct 296000 GCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTT 296059 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAG 138955 | ||||| | ||| | || | |||||| || ||| || | |||||| | | Sbjct 296060 GAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGAC---TTCTCCGCTTCGGGCACTG 296116 Query 138956 GATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTC--GTATG 139013 |||| |||| | |||||||| ||||| || ||| |||| || || ||| | ||| Sbjct 296117 GATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGATG 296176 Query 139014 CTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTT 139073 || | | || ||| || | || | | | | || ||||| ||| |||| Sbjct 296177 CT--AGTTTTTTAAAGTCAAAAGTCCGCTCAGGG--GT----GACGT--ACA----TGTT 296222 Query 139074 GACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAAT 139133 || || ||||| | || || ||||| || |||||| | | ||||||| || || Sbjct 296223 GAGGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGAT 296282 Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193 ||| | || | || || | ||||| || || | ||| || || ||||| |||||||| Sbjct 296283 TTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTT 296342 Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAA 139253 || || |||||||| ||||| ||||| ||||| ||||| || | ||| |||||| Sbjct 296343 GCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGC 296402 Query 139254 TTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTC 139313 | ||| | | ||| | | || ||| | | | | | | | | | ||| || Sbjct 296403 GTGCCACACCTGCTGAGCCT-----TCAC-CAC---ACGCTTGACCCTCCCCTCCTTCTC 296453 Query 139314 ---------GTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTT 139364 |||||| | || || ||||| | || || || |||||| Sbjct 296454 ATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTC 296513 Query 139365 GTCAGGACACATGAGCGACCATACGCCGTTCGCCTTG-ACGCGCCTCATGAACAGATCCG 139423 | |||||||| || ||||| | ||| || || || | | ||||||||| || | Sbjct 296514 ATTGGGACACATCAGAGACCAGTCTTGGTT-GCTTTCCACTCTCTTCATGAACAAGTCGG 296572 Query 139424 GAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTT 139483 | ||||||| ||| | | | || | ||| ||| || ||| || |||| | Sbjct 296573 GGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCT 296632 Query 139484 TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 ||| | ||||| ||||| |||||| |||||| || ||||| || ||||| | || | Sbjct 296633 TCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTC 296692 Query 139544 CTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | | |||| || || || ||||| | ||| | | || ||| | || | || || Sbjct 296693 CGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCA 296752 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACT----GTTGCGAG 139654 | || | | ||| | | | ||||| |||| ||| ||| || |||| Sbjct 296753 TGGGGACTAACCCGTTTGAGTTGCCGTTTGTGC--CGGCAATGTAGCTCCCCGTTGA--- 296807 Query 139655 CTCGGACGTCATGT-ACATTGATGCCGATTCCGCC-GCCAAATTTGGATATTAAAACGCA 139712 || || | || | || | ||||||||| || ||| | |||| | || | | || Sbjct 296808 -TCTGATG-CAGCTGACCGCCACGCCGATTCCTCCAGCCGACTTTG-AGATGAGGGCACA 296864 Query 139713 ATCGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 | || | | || ||||| || ||| ||||||||||||| ||| | || ||| |||| Sbjct 296865 CT-GCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGC 296923 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 | || || || || || || ||||| || |||||||| ||||| |||| Sbjct 296924 AGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGA 296983 Query 139832 ACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGA 139891 || | | ||||| || | ||| || || ||||| | || ||| ||| ||||| Sbjct 296984 ACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGA 297043 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 | || || || || | ||| ||||| || ||| ||||||||||| ||| | ||| | Sbjct 297044 TGCCAACGGAAACCCTCATGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCT 297103 Query 139952 ttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 | ||| || |||| ||| || |||||| |||||||| | | ||| ||| ||| Sbjct 297104 TCAGCAGGTAGGACCG--CTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCG 297159 >seq1833 Length=1844611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | || || || || || || | || || || ||| Sbjct 459256 GATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCCCAG 459315 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| || || || || || ||||| || || Sbjct 459316 CGACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCA 459375 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||||||||| |||||||| |||||| | | | | || || || || Sbjct 459376 GCAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAA 459435 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || || | ||| | || || | ||||| Sbjct 459436 CATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGG 459483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 459713 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459772 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || ||||| || || Sbjct 459773 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459832 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || || || |||||| | | | | || || || ||| Sbjct 459833 CAGCGTCTCATCTTCGCTGGAAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAAC 459892 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | ||| | || || | ||||| Sbjct 459893 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGG 459939 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 459485 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459544 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| || || || ||||| || || Sbjct 459545 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 459604 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| || || | | | || || || ||| Sbjct 459605 CAGCGTCTCATCTTCGCTGGAAAGCAGCTAGAAGACGGTCGCACTCTCTCCGACTACAAC 459664 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || || | ||||| Sbjct 459665 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTGAGGGGAGG 459711 >seq1532 Length=669350 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 291822 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 291763 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 291762 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 291703 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| |||||||| || ||| | | | | || || || ||| Sbjct 291702 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291643 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 291642 ATCCAGAAGGAGTCCACCCTTCATCTTG 291615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 291366 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 291307 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || || || | Sbjct 291306 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAAG 291247 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| |||||||| || ||| | | | | || || || ||| Sbjct 291246 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291187 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 291186 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 291152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 291594 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 291535 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| ||||| ||||| || || || || || Sbjct 291534 GACACCATTGAGAACGTGAAAGCTAAA-ATCCAGGACAAGGAAGGCATTCCCCCTGACCA 291476 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| |||||||| || ||| | | | | || || || || Sbjct 291475 GCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 291416 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 291415 TATCCAGAAGGAGTCCACCCTTCATCTTG 291387 >seq464 Length=489674 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||||| || |||||||| || || ||||| || || ||| Sbjct 437336 GATGCAGATTTTTGTGAAAACGCTGACGGGTAAAACCATCACCCTCGAGGTGGAGCCCAG 437395 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 ||||| |||| | || ||| || ||||||||||||||||| Sbjct 437396 TGACACTATAGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGG 437440 >seq378 Length=1964660 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||||| || |||||||| || || ||||| || || ||| Sbjct 434819 GATGCAGATTTTTGTGAAAACGCTGACGGGTAAAACCATCACCCTCGAGGTGGAGCCCAG 434878 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGG 24807 ||||| |||| | || ||| || ||||||||||||||||| Sbjct 434879 TGACACCATAGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGG 434923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449863778947920