Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq402 233 1e-55 seq1586 125 5e-23 seq1253 111 1e-18 seq403 111 1e-18 >seq402 Length=1600201 Score = 233 bits (258), Expect = 1e-55 Identities = 947/1475 (64%), Gaps = 19/1475 (1%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| ||||| ||||||||||| | || || || || || | || ||||| |||| Sbjct 1359197 CACATTCAGAATTCCATTGGCATCAATGTCGAAGGTTACCTCCACCTGTGGGACACCTCG 1359256 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 ||||||| ||||| ||| | | ||| | || || || || || || || | Sbjct 1359257 GGGAGCAGGAGGGATACCTGTGAGCTCAAACTTGCCAAGGAGGTTGTTGTCCTTGGTCAT 1359316 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || |||||||| | | || || || | | || ||||||||||| || | Sbjct 1359317 GGCTCTCTCACCCTCATACACCTGAATCAGCACACCTGGCTGGTTATCTGAATATGTAGA 1359376 Query 281611 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || | ||||| | | || || || || ||||||| | || | | ||||||| Sbjct 1359377 GAAGA-TCTGGGTCTGCTTGGTGGGGATGGTGGTGTTTCGTTTGATTAAAGGTGTCATAA 1359435 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 ||||| || || || | || ||||| ||||||| ||||| | || | | || || Sbjct 1359436 CTCCACCCGCAGTCTCAATGCCCAGAGACAGAGGAGCCACATCCAGCAGTAGCAAATCTT 1359495 Query 281730 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | | ||||| ||| | ||| | || ||||| || || | || |||||||| || | Sbjct 1359496 GGACATTTTCTGAAGTGTCACCCATCAGGATAGCAGCCTGGACTGCTGCACCATAGGCCA 1359555 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 281848 |||||||||| || || | | | || | || | | ||||| ||||| | || |||| Sbjct 1359556 CAGCTTCATCTGGGTTGATGCTCTTGTTCAATTCTCTGCCATTAAAAAAGTCCTGCAAGA 1359615 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || | | || ||||| | | || || ||||| | ||||||||||| | || Sbjct 1359616 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACAATTTCATGGATCTTG 1359674 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || |||||||| || | ||| | | || ||||| || || || | || || Sbjct 1359675 GACTTATCCAGCTTGGCATCTTGCAGAGACTTCTCAACTGGATCCAGTGTTCCCCTGAAG 1359734 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 282026 | ||||| || || || || || || || || ||| | || || || || | Sbjct 1359735 AGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATTGAGGTGTAGAAGTCGATAC 1359792 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 282086 | || |||| ||| |||| |||| ||| || || || || || | | || | Sbjct 1359793 CCTCAAACAGAGAGTCAATCTCAAGGCTAGCCTGGGTGCTGGAGGACAGGGTCCTCTTTG 1359852 Query 282087 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGT 282144 | | |||||| || || | || || | | ||| | || ||| | | | || | Sbjct 1359853 CTCTTTCACAAGCAGTGCGCAGCCTCCTCACTGCTCT--CTTATTTTGGCTGATGTCCTT 1359910 Query 282145 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTC 282204 || | |||||| || || || || ||| | | || | || || ||||| || || Sbjct 1359911 CTTGTGTTTTCTTTTAAATTCCTCTACAAAGTGGTTGACCATCCGGTTGTCAAAGTCCTC 1359970 Query 282205 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 282264 || || | | || | |||| || | | | |||| || | |||||||||| | Sbjct 1359971 CCCACCAAGATGTGTGTCGCCTGCAGTGGATTTCACTTCAAAGATGCCATCTTCAATGGT 1360030 Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTT 282323 || | | || ||| ||| || ||||| | |||||| || || || || | | | Sbjct 1360031 CAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACGTTGCGCTCCCC 1360090 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | | || ||| ||| || || || || | || || || || |||||||| || || | Sbjct 1360091 TCTTTTACCTTT-ATCCAGGCCGTAGGCGATGGCTGCTGCTGTGGGTTCATTGATGATCC 1360149 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 ||| |||||| || |||| || || || || || |||||||| || || || |||| Sbjct 1360150 TCAGAACATTCAGTCCAGAGATCACCCCAGCGTCCTTGGTGGCTTGCCTCTGGGAGTCGT 1360209 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTG 282503 ||||||| || ||||| || || || || | || |||| || ||| | || || | Sbjct 1360210 TAAAATACGCTGGAACTGTGATGACTGCGTTTGACACTTTTTGTCCCAGGTAGGCTTCAG 1360269 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGG 282563 | | | ||||||||| | | ||| || || |||| |||||| | | | |||| | Sbjct 1360270 CGATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCTTCTGG-GTAGAAGGCTTTG 1360328 Query 282564 AT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622 | || || ||| |||| | | ||||| | | || | || ||||| || Sbjct 1360329 GTCTCCCCTTTATACTCAACTTGGACTTTGGGTTTTCCGCTATCACTGATCACTTTGAAG 1360388 Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682 ||||| ||||| || || || ||| |||| |||| | ||| || || | || Sbjct 1360389 GGCCAGAGCTTCATGTCAGACTGGACAACAGGGTCGGTAAACTTTCTCCCGATGAGCCGC 1360448 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || |||||||| || || |||| || || | ||| | |||| ||||| ||||||||| Sbjct 1360449 TTGGCATCAAAGATTGTGTTGGCGGGGTTCATGGCAACCTGATTCTTGGCAGCATCTCCA 1360508 Query 282743 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802 || || ||||| || ||||| | ||||| ||||| || | || || || || Sbjct 1360509 ATGAGCCTCTCTGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTTCTGTTTCCCTGGTCG 1360568 Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 282862 || || || || || ||||| |||| || | || || |||||| | | || || || Sbjct 1360569 TTGGCGATTATCTCCACTTTGCCATGCTGGAAAACCCCGACACAAGAATAGGTGGTGCCC 1360628 Query 282863 AAATCAATACCAATAGCAAT---TTTATCTGACAT 282894 | |||||| ||||||| || |||| ||||||| Sbjct 1360629 AGATCAATGCCAATAGATATTCCTTTAGCTGACAT 1360663 >seq1586 Length=1120755 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| || ||||||||||| ||||| || || | || ||| Sbjct 832209 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCAGCACA 832150 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| |||| ||||||||||||||||| | || || || || || || Sbjct 832149 TTAAGCCCAGCAATGGTTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAGTAA 832090 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| |||||||| |||| Sbjct 832089 GCAGGAACTGTAATAACTGCAT 832068 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| ||| | |||| ||||| ||||| ||||||||||| | ||||| || || ||||| Sbjct 833432 TTTGTCAACTGCAGATACATTGAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAAT 833373 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 |||||||| ||||| | |||||||| || || || | |||| | |||||| |||| Sbjct 833372 CTGAGGGACACCTCTGGGTGCAGGTGGAATACCGGTCAGCTCAAATTTGCCCAGAATATT 833313 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTC 281565 ||| || || || | || |||||| || Sbjct 833312 ATTGTCCTTGGTCATGGCTCTTTCACCTTC 833283 >seq1253 Length=6611 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| ||||| ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 5345 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 5404 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 5405 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 5464 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | || |||| |||||| Sbjct 5465 GCAGGCACGGTCACTACAGCATTTGTTAC 5493 >seq403 Length=2440063 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| ||||| ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 729294 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 729353 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 729354 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 729413 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | || |||| |||||| Sbjct 729414 GCAGGCACGGTCACTACAGCATTTGTTAC 729442 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| ||||| ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 731079 TTTTTGTCAAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 731138 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 731139 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 731198 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | || |||| |||||| Sbjct 731199 GCAGGCACGGTCACTACAGCATTTGTTAC 731227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740335138015164