Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2008 122 8e-23 seq1014 122 8e-23 >seq2008 Length=122252 Score = 122 bits (134), Expect = 8e-23 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 || || ||||| || | || || ||| | ||| |||||||| ||| |||||| ||||| Sbjct 53776 AGTATCTGGGGCCCAACATGTGACGGCCTCGATCGCATTGTTGAGCAGTGTGACCTGCCT 53717 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 || || || |||||||||||||| | ||||| |||||||| || |||| | ||| | Sbjct 53716 GACCTGCAGGTGGGCGACTGGCTGGTCTTTGAGAACATGGGTGCCTACACCGTGGCTGCC 53657 Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 || || |||||||||||||||| || || || | |||||||| || || Sbjct 53656 TCCTCCACCTTTAACGGCTTCCAAAGACCTGACATTCACTATGTCATGTC 53607 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 20588 CTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGCCAACGCCTGCTAAAACAGGCCAAA 20647 |||||||| ||||||||||| || | | || | | | | || || | | ||| ||| Sbjct 54776 CTGAGTGTGAAGTTTGGGGCCCCACTCAAGGCTTGTCGAGGTCTTCTGGAGCGGGCTAAA 54717 Query 20648 AAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCACGTGGGCAGTGGCTGCA 20699 || | ||||| || |||||||| |||||||||||||| ||||||||||||| Sbjct 54716 GAACTGGGCCTGGATGTGATCGGCGTCAGCTTCCACGTTGGCAGTGGCTGCA 54665 >seq1014 Length=1076155 Score = 122 bits (134), Expect = 8e-23 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 || || ||||| || | || || ||| | ||| |||||||| ||| |||||| ||||| Sbjct 1052 AGTATCTGGGGCCCAACATGTGACGGCCTCGATCGCATTGTTGAGCAGTGTGACCTGCCT 1111 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 || || || |||||||||||||| | ||||| |||||||| || |||| | ||| | Sbjct 1112 GACCTGCAGGTGGGCGACTGGCTGGTCTTTGAGAACATGGGTGCCTACACCGTGGCTGCC 1171 Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 || || |||||||||||||||| || || || | |||||||| || || Sbjct 1172 TCCTCCACCTTTAACGGCTTCCAAAGACCTGACATTCACTATGTCATGTC 1221 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 20588 CTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGCCAACGCCTGCTAAAACAGGCCAAA 20647 |||||||| ||||||||||| || | | || | | | | || || | | ||| ||| Sbjct 52 CTGAGTGTGAAGTTTGGGGCCCCACTCAAGGCTTGTCGAGGTCTTCTGGAGCGGGCTAAA 111 Query 20648 AAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCACGTGGGCAGTGGCTGCA 20699 || | ||||| || |||||||| |||||||||||||| ||||||||||||| Sbjct 112 GAACTGGGCCTGGATGTGATCGGCGTCAGCTTCCACGTTGGCAGTGGCTGCA 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463510752959520