Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq265 297 2e-75 seq1833 149 6e-31 seq1532 131 2e-25 seq1140 105 6e-18 seq2005 84.2 2e-11 >seq265 Length=606166 Score = 297 bits (328), Expect = 2e-75 Identities = 1008/1548 (65%), Gaps = 38/1548 (2%) Strand=Plus/Plus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||||| | || ||||| ||||||| | ||||||||| || | ||| || | Sbjct 295634 GCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTC 295693 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 || || | |||||| || | | ||| | |||||||||||||||| ||||| | Sbjct 295694 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 295753 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT- 148409 |||| | ||||||||||| || | |||||| ||| | || ||| || ||| Sbjct 295754 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCA---CGCCATGTTTGG 295810 Query 148410 --ATTTTGCGCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACAT 148465 || || ||||| | ||||||| |||| ||| | || ||| | |||||| Sbjct 295811 CGATCTTCTCTTTCAGCAGCTTCCAGTCCAACAGATCGGTG--GGCGTCTTCTCCCACAT 295868 Query 148466 GTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTG 148525 ||||||||| || ||||| ||| | || ||| ||||||| ||| || ||| | Sbjct 295869 GTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAG 295928 Query 148526 CGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585 | | || ||||| |||||||||||||| || ||| ||||||| || ||||| ||||| Sbjct 295929 CTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTG 295988 Query 148586 CCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTC 148645 |||| |||||| |||| |||||| |||| ||||| | | | || || || Sbjct 295989 GATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATC 296048 Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705 || | || || ||||| | || || |||| ||| ||||||| | | |||| Sbjct 296049 CGCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGA-CTTCTC-CGCT 296106 Query 148706 CTCGAGC---GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCT 148761 ||| || |||||| ||| |||||||||||| ||||| || | || | || | Sbjct 296107 -TCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTG-ACGATGACTT 296164 Query 148762 TTGT-AATTCTGCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTC 148817 | || | ||| || || ||| || | | ||| || | | ||| Sbjct 296165 TGGTCACGGATGC-TAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTG 296223 Query 148818 ACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATC 148877 | |||||| ||||| ||||| || || || ||| || | | |||| || ||||| Sbjct 296224 AGGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATT 296283 Query 148878 TCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTG 148937 || | ||| || ||||||| |||||| ||||| |||| || |||||||| | |||| Sbjct 296284 TCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTG 296343 Query 148938 CACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAAC 148997 || ||||| ||||||||||||||||| ||| ||||| ||| | || | ||| Sbjct 296344 CAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCG 296403 Query 148998 CGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057 | || | ||| || ||| ||| | | ||||||| ||| ||| |||| Sbjct 296404 TGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTG 296463 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 || ||| ||| ||| |||| || | || ||||| || ||||| |||| | || ||| Sbjct 296464 TAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACAC 296523 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 || || ||||| | || | ||| | |||||| |||| ||||| | ||| || Sbjct 296524 ATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGG 296583 Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGC 149237 ||||| | ||||| | ||| | || || || |||| ||| | || Sbjct 296584 GCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 296643 Query 149238 ACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCG 149293 | | || | ||| |||||||||||| | ||||| |||| || || ||| | Sbjct 296644 AAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG 296703 Query 149294 CTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 ||||||||||||||||| | || || ||||||| | |||| | ||| || | | Sbjct 296704 -TTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAA 296762 Query 149354 GCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCAC 149413 || | | ||||||| || | |||| || || | || | | || Sbjct 296763 CCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGAC 296822 Query 149414 GTTGACGCCGATGCCGCC-GCCGTACTTTGAGAT--GGCCGCGCAGTCGCCGAGCGTCGA 149470 |||||||| || || |||| |||||||||| || | | | | | ||| ||| Sbjct 296823 CGCCACGCCGATTCCTCCAGCCG-ACTTTGAGATGAGGGCACACTGCTTCAGAGTGTC-- 296879 Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 ||||||||| |||||||||||| |||||||| ||||| ||||| | ||| || || Sbjct 296880 GTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGG 296939 Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590 || ||||| ||| | || || |||||| || || | |||| || Sbjct 296940 CCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAG 296999 Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCG 149650 || | ||| | ||| | | ||| ||||| | |||||||| | || || | Sbjct 297000 CAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCT 297059 Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCG 149708 ||| ||||| ||||| || || || ||||||||| || || |||| |||| ||| Sbjct 297060 CATGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCG 297119 Query 149709 TTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCG 149756 || || |||||| |||||||| | |||||| ||||||||| || Sbjct 297120 --CTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCGCGGTCG 297165 >seq1833 Length=1844611 Score = 149 bits (164), Expect = 6e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| ||| ||| || |||||||| | Sbjct 459682 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACC-GTCTTCTAGCTGCTTTC 459624 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| ||||||||||| |||||||| |||||| || Sbjct 459623 CAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCT 459564 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| |||||| |||||||||| || | ||||| ||| || || ||||| | Sbjct 459563 TGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGG 459504 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 459503 TCTTCACGAAGATCTGCAT 459485 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | |||||||||| Sbjct 459460 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAGCT 459402 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | ||||| ||||||||||| ||||||||||| ||||| || ||||| Sbjct 459401 GTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCT 459342 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | |||||| |||||||||| || | ||||| ||| || || | Sbjct 459341 TAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAG 459282 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 459281 TCAAGGTCTTCACAAAGATCTGCAT 459257 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | ||||| || | Sbjct 459916 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCAAGTT 459858 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | ||||| ||||||||||| ||||||||||| ||||| || ||||| Sbjct 459857 GCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCT 459798 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | |||||| |||||||||| || | ||||| ||| || |||| Sbjct 459797 TAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGG 459738 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 459737 TCAGGGTCTTCACAAAGATCTGCAT 459713 >seq1532 Length=669350 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || || ||||| |||| Sbjct 291169 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCAAGCTGTTTGC 291227 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||| ||| || || |||||||||||||| |||||| || Sbjct 291228 CGGCAAAGATCAGCCTCTGCTTGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCT 291287 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| ||||||| || || | ||||| ||| |||||||| || | Sbjct 291288 TGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGG 291347 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 291348 TCTTGACGAAGATCTGCAT 291366 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 291619 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCAAGCT 291677 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || |||| ||||||||| || || ||||||||||| || ||||| Sbjct 291678 GTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCT 291737 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| ||||||| || || | ||||| ||| ||||||| Sbjct 291738 TAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGG 291797 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || || ||||||||| Sbjct 291798 TGAGGGTCTTGACAAAGATCTGCATG 291823 Score = 127 bits (140), Expect = 2e-24 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| |||||||| ||| | ||| | | | || || |||| Sbjct 291391 ATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCA-TCTTCAAGCT 291449 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || |||| ||||||||| || || |||||||||||||| ||| | Sbjct 291450 GTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGAT-T 291508 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || || | | ||||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 291509 TTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCA 291568 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 291569 GTAAGGGTCTTGACGAAGATCTGCAT 291594 >seq1140 Length=734468 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | |||||| |||||| ||||||| ||||| ||||| || | Sbjct 320376 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 320435 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCC 148976 ||||||| | ||||| || |||||||| ||||||||||| || |||||| Sbjct 320436 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCC 320488 >seq2005 Length=666128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 130836 ATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 130777 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 || || ||| || || ||||| | ||||||||| ||| ||||| |||| |||||| Sbjct 130776 GCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGGCCACCACGCGCTC 130718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483384458841360