Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1833 109 4e-19 seq1532 96.9 2e-15 >seq1833 Length=1844611 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||| ||| | ||| | ||| || ||| ||| || || |||||||| ||||| Sbjct 459484 ACCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 459425 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | ||||| |||||||| || | ||||||||| ||| | || Sbjct 459424 GAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGG 459365 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || || | | | || | ||||||||| | |||| Sbjct 459364 GATGCCCTCCTTATCCTGGATCTTAGCCTTGA-CGTTCTCGATGGTGTCGCTGGGCTCCA 459306 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || || || |||||||||||||| Sbjct 459305 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 459257 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | ||| | ||| || ||| ||| || || |||||||| |||||| Sbjct 459939 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459880 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| ||||| || || || | ||||||||| ||| | || Sbjct 459879 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459820 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || || || |||| | | || | ||||||||| | ||||| Sbjct 459819 ATGCCCTCCTTATCCTGGATCTTAGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCCAC 459761 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || ||||||||||||||| Sbjct 459760 CTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATA 459712 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| | ||| | || || ||| ||| || || |||||||| ||||| Sbjct 459712 ACCTCCCCTCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 459653 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || ||||| || || || | ||||||||| ||| | || Sbjct 459652 GAGAGTGCGACCGTCTTCTAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGG 459593 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || || | ||| ||| ||||||||| | |||| Sbjct 459592 GATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CATTTTCAATGGTGTCGCTGGGCTCCA 459534 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 459533 CCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATA 459484 >seq1532 Length=669350 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| | || | ||| || ||| ||| || || || ||||| ||||| Sbjct 291367 ACCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 291426 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | ||||| |||||||| |||| | |||||| || | || Sbjct 291427 GAGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 291486 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||||| ||||| | | ||| ||||||||| | || | Sbjct 291487 AATGCCTTCCTTGTCCTGGATTTTAGCTTTCA-CGTTCTCAATGGTGTCGCTGGGCTCAA 291545 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 291546 CCTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCATA 291595 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| | || | ||| || ||| ||| || || |||||||| ||||| Sbjct 291595 ACCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 291654 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | ||||| |||||||| |||| | |||||| || | || Sbjct 291655 GAGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 291714 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| || || || || || | | | ||| ||||||||| | || | Sbjct 291715 AATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTCTCAATGGTGTCGCTGGGCTCGA 291773 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || |||||||||||||| Sbjct 291774 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 291822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328679907434880