Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq265 174 1e-38 seq1833 93.3 4e-14 seq1140 86.0 6e-12 >seq265 Length=606166 Score = 174 bits (192), Expect = 1e-38 Identities = 870/1361 (64%), Gaps = 46/1361 (3%) Strand=Plus/Plus Query 147042 GATGTTGTCCTTCAA-AGTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACAT 147098 ||| || || |||| || || ||||||| ||| ||| | ||||||| | |||||| Sbjct 295812 GATCTTCTCTTTCAGCAGCTT-CCAGTCCAACAGATCG--GTGGGCGTCTTCTCCCACAT 295868 Query 147099 GTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTC 147158 |||||||||||| | || ||| | ||| ||| || |||| |||| ||| Sbjct 295869 GTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA- 295927 Query 147159 GCGCTGCG-CCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTT 147217 || | ||| ||| || ||||| ||||| || || | ||||| ||||| || |||| Sbjct 295928 GCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTT 295987 Query 147218 GTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCAT 147277 | |||| || | ||| || ||| || | || ||||| || | ||||||| Sbjct 295988 GGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCAT 296047 Query 147278 CGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTG-----CTGCGCTT 147332 | |||||||| || | || | || || || | || | |||| || ||||| Sbjct 296048 CCGCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTT 296107 Query 147333 CGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAAC 147392 || || | |||||| ||| || || |||||||| | ||| || | || Sbjct 296108 CGGGCACT-----GGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGAC 296162 Query 147393 TTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGAC-ACGTACGCATT 147451 ||| || | | | ||||| | || ||| |||||| || | |||||| || Sbjct 296163 TTTGGTCACGGATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTAC--AT- 296219 Query 147452 GGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCA 147511 ||| | |||||| || |||||||| ||||| || ||| ||| || | |||| | | Sbjct 296220 -GTTGAGGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAA 296278 Query 147512 CGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCC 147571 ||||||| | ||| |||||||||| ||| || |||| ||| ||||| ||||| || | Sbjct 296279 CGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTC 296338 Query 147572 GATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGA 147631 | ||||| ||||||||| | ||||||||||| |||||| || || | | ||| Sbjct 296339 GGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACT---CGA 296395 Query 147632 TAAACCTATG---CAGGTCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGTTTT 147685 ||| || || | ||| || || ||| |||| || | ||||| || | Sbjct 296396 TAATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCT--TGA-CCCTCCCCTCCTTCT 296452 Query 147686 CGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACT 147745 | || ||| | | ||||||||| || || | || ||| | || |||||||||| Sbjct 296453 CATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACT 296512 Query 147746 GATGCGGACACATCAGCGACCACATGTCGTCCGCGTT-AACGCGTCGCATAAACAGATCC 147804 || ||||||||||| ||||| | | | || || || | ||| |||| || Sbjct 296513 CATTGGGACACATCAGAGACCA-GTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCG 296571 Query 147805 GGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGC 147862 || | |||||| ||||| | ||| || | || || ||| ||||| || |||| Sbjct 296572 GGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGC--TCCTCCTTTCCTGTGTTCT 296629 Query 147863 GTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCG 147922 |||| | || | | | | | ||| |||||| || || | ||| | ||| | | Sbjct 296630 TCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGG 296689 Query 147923 CACC---TTTACGCTTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCA 147979 | || | | || |||||||||||||||| || || ||||||| | || | || Sbjct 296690 CTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCA 296749 Query 147980 CCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTC 148039 |||||| | | ||| | | ||||||| ||| || | ||| || | || Sbjct 296750 GCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTGATC 296809 Query 148040 GCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCG 148098 | | || ||||| || || || |||| ||||||| ||| || || | Sbjct 296810 TGATGCAGCTGACCGCCACGCCGATTCCTCCAGCCG-ACTTTGAGATGAGGGCACACTGC 296868 Query 148099 CCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAA 148158 || || ||||||||| ||||||||||||| || | | | |||| || || Sbjct 296869 TTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTG 296928 Query 148159 CACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAAT 148218 ||| || || | || || || ||| || || || ||||| || ||| | Sbjct 296929 GACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCAC 296988 Query 148219 TTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCC 148278 || | || || | || |||||||| || | |||||||| | ||| ||||| Sbjct 296989 TTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCA 297048 Query 148279 AGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGA 148338 | | || | ||||||||||||||| || |||||||| |||| ||||||||| || Sbjct 297049 ACGGAAACCCTCATGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGC 297108 Query 148339 AGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTA 148379 || || || || || ||| | |||||| | ||||| Sbjct 297109 AGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTA 297149 >seq1833 Length=1844611 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || ||| ||||||||||| |||| | Sbjct 459450 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCA 459391 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| ||||| || ||||| || || || | Sbjct 459390 AAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTGACG 459331 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | || || ||||||| || || Sbjct 459330 TTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTC 459271 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 459270 ACAAAGATCTGCAT 459257 >seq1140 Length=734468 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||||| || | ||||||||||||| |||| ||| |||| || ||||| | Sbjct 320376 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 320435 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||| |||||| || || ||| | ||||||||||| Sbjct 320436 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGG 320475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575370753040