Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1006 102 3e-18 seq1622 100 9e-18 seq2052 98.7 3e-17 seq1903 98.7 3e-17 seq1013 98.7 3e-17 seq917 98.7 3e-17 seq82 98.7 3e-17 seq1303 96.9 1e-16 seq2042 95.1 4e-16 >seq1006 Length=3803233 Score = 102 bits (112), Expect = 3e-18 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 2760 GTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 || |||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3611997 GTTTTTA-GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 3612055 Query 2820 GGTTCAACCCCGGGCTTCAGC 2840 ||||| | |||||| ||| || Sbjct 3612056 GGTTCGATCCCGGGTTTCGGC 3612076 Score = 102 bits (112), Expect = 3e-18 Identities = 70/78 (90%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 2763 TTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 |||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3613161 TTTA-GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGT 3613219 Query 2823 TCAACCCCGGGCTTCAGC 2840 || | |||||| ||| || Sbjct 3613220 TCGATCCCGGGTTTCGGC 3613237 >seq1622 Length=2316789 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1017704 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1017763 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1017764 CCCGGGTTTCGGC 1017776 >seq2052 Length=894076 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 814991 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 815050 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 815051 CCGGGTTTCGGC 815062 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 867958 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 868017 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 868018 CCGGGTTTCGGC 868029 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 870641 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 870700 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 870701 CCGGGTTTCGGC 870712 >seq1903 Length=1067412 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 744168 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 744109 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 744108 CCGGGTTTCGGC 744097 >seq1013 Length=1338882 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1026733 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1026792 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1026793 CCGGGTTTCGGC 1026804 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1027382 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1027441 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1027442 CCGGGTTTCGGC 1027453 >seq917 Length=1165527 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 487962 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 488021 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 488022 CCGGGTTTCGGC 488033 >seq82 Length=1543617 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 173468 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 173527 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 173528 CCGGGTTTCGGC 173539 >seq1303 Length=3500315 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 2661544 GGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 2661603 Query 2828 CCCGGGCTTCAGC 2840 || ||| ||| || Sbjct 2661604 CCTGGGTTTCGGC 2661616 >seq2042 Length=1096723 Score = 95.1 bits (104), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCT-AAAGGTCCCTGGTTCAA 2826 ||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| | Sbjct 806800 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAAGGTCCCTGGTTCGA 806741 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 806740 TCCCGGGTTTCGGC 806727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848557443030