Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq265 156 4e-33 seq1833 120 3e-22 seq1532 107 2e-18 seq1140 82.4 8e-11 >seq265 Length=606166 Score = 156 bits (172), Expect = 4e-33 Identities = 901/1429 (63%), Gaps = 30/1429 (2%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| ||||||||| || || ||||| || |||||||| || | || Sbjct 297114 CTACCTGCTGAAGATCAACGGCAAAGTGGCCGAACGTCCCCAGCACATGCTCATGAGGGT 297055 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | || ||||| ||| | ||||| ||||| ||| | || || ||| | || |||| Sbjct 297054 TTCCGTTGGCATCCACAGAACGGACATCGACGCAGCCATTGAGACCTACAACCTGCTGTC 296995 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| ||||| || | || || || || ||| |||||| Sbjct 296994 GGAGAAGTGGTTCACCCACGCCTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCA 296935 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 296934 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACAC 296875 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACG 7822 ||| | || ||| || || || | |||| || ||||| || || || | | Sbjct 296874 TCTGAAGCAGTGTGCCCTCATCTCAAAGT-CGGCTGGAGGAATCGGCGTGGCGGTCAGCT 296816 Query 7823 ACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 | | | | | || ||| ||| | ||| ||||| || | | ||| |||| | Sbjct 296815 GCATCAGATCAACGGGGAGCTACATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCC 296756 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAAAG 7942 ||||| || | || | ||| ||| ||| || |||| |||||||| || || |||| Sbjct 296755 CCATGCTGAGAGTTTACAACAACACGGCACGTTATGTCGACCAGGGCGGCAA---CAAAA 296699 Query 7943 GCGCCG----CT--GCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAA 7996 | ||| || ||||| || |||||||||||||| ||| | | | | || Sbjct 296698 GACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTTGACTTCCTGG 296639 Query 7997 ATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGC--GCGATCTATTCTTCGGATT 8054 | ||| |||| || || || ||| || || | || || |||| || | Sbjct 296638 AGCTGAAGAAGAACACAGGAAAGGAGGA--GCAGAGGGCCAGAGACCTTTTCTACGCCCT 296581 Query 8055 GTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTG 8114 |||| | ||||| |||| |||| | | || | | || | | ||||| || ||||| Sbjct 296580 GTGGATCCCCGACTTGTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTG 296521 Query 8115 CCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAA 8174 ||| || || || | | | || ||| | ||||| | | |||| Sbjct 296520 TCCCAATGAGTGTCCCGGGCTGGACGAGTGTTGGGGTGAGGAGTTTGAGAAGCTCTACAC 296461 Query 8175 ACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGC 8234 ||| || | || || | | ||| ||||| || | | || | ||| Sbjct 296460 TTCATATGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGC 296401 Query 8235 CATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAA 8294 ||||||||| | || | |||||||| | |||||||||||||||||||||||| ||||| Sbjct 296400 CATTATCGAGTCCCAGACAGAAACCGGCACGCCGTACATGCTGTACAAAGACGCCTGCAA 296341 Query 8295 CGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAAT 8354 | || ||||| || || ||||||| || ||||||| || ||| | ||||| Sbjct 296340 CCGAAAGAGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCAACCTCTGCACAGAAAT 296281 Query 8355 TGTACAGTACAGC-GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAA 8413 || | |||| | ||| |||||| || || || || ||||| || || | | | Sbjct 296280 CGTTGAATACACCAGCG-ACGACGAGGTAGCGGTCTGTAATCTGGCCTCCATCGCCCTCA 296222 Query 8414 ACGCGTTCGTTGATCGACGCTCA-AACACTTACGACTTTGAACAATTGAAAAACGCCGTG 8472 || || || || | || | |||| |||||| || || | | ||||| Sbjct 296221 ACATGTACG----TCACCCCTGAGCGGACTTTTGACTTTAAAAAACT---AGCATCCGTG 296169 Query 8473 ---CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAA 8529 |||| | || || || | ||||| || | || || ||||| || Sbjct 296168 ACCAAAGTCATCGTCAAAAACTTGAACAAGATCATCGAGATTAACTTCTATCCAGTGCCC 296109 Query 8530 GAAGCGCGCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGC 8588 |||||| | | | || |||| ||||||||| || | || | ||||| |||||| |||| Sbjct 296108 GAAGCG-GAGAAGTCCAACAAGCGCCACAGGCCGATAGGAATTGGCGTTCAAGGTTTGGC 296050 Query 8589 CGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACAT 8648 || || || | || |||| ||| | ||||||| || |||| |||| ||||| Sbjct 296049 GGATGCCTTCATCCTGATGCGTTACCCGTTTGAAAGCCCCGAGGCGCAGCTGCTGAACAT 295990 Query 8649 AAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGA 8708 ||||| || || | || |||| ||| | || || ||||| | || ||| || Sbjct 295989 CCAAATATTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGA 295930 Query 8709 ATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768 | ||| | ||||| |||||| ||| || | |||| || || | || ||||| Sbjct 295929 GCTCGGCCCCTACGAGACGTACGAAGGCTCTCCGGTCAGCAAGGGCATCCTCCAGTACGA 295870 Query 8769 CATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGC 8828 ||||||| | ||||||||| | ||| | | |||| ||||| || || || Sbjct 295869 CATGTGGGAGAAGACGCCCACCGATCTGTTGGACTGGAAGCTGCTGAAAGAGAAGATCGC 295810 Query 8829 TCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCA 8888 || || || | || ||| || |||| |||||||| ||| | || || || Sbjct 295809 CAAACATGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCACA 295750 Query 8889 AATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || |||| |||||||| || | || | | ||||| |||| | ||| Sbjct 295749 GATCCTGGGCAACAACGAGTCTATCGAAGCCTACACCAGCAACATCTAC 295701 >seq1833 Length=1844611 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | |||||| || || ||||| ||||| || |||||||||||| Sbjct 459483 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459424 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||||||||| ||||| || | ||||||||| || || || Sbjct 459423 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGG 459364 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 459363 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 459304 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || ||||| || || || || || || || || || ||||| ||| Sbjct 459303 TCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATCTTG 459253 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 459711 CCTCCCCTCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459652 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| || || || || || | ||||||||| || || || Sbjct 459651 AGAGTGCGACCGTCTTCTAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459592 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||| | ||||| Sbjct 459591 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 459532 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 459531 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||||||||| || || | |||||| || || ||||| ||||| || |||||||||||| Sbjct 459942 TTTCCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 459883 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || || || || || || || || | ||||||||| || || Sbjct 459882 GAGAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGA 459823 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || || || || || | |||||| | ||| Sbjct 459822 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCC 459763 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || ||||| | || || || || || ||||| Sbjct 459762 ACCTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 >seq1532 Length=669350 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| ||||| || |||||||||||| Sbjct 291140 CCGCCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291199 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | ||||| || || || Sbjct 291200 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGA 291259 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 291260 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 291319 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 291320 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 291366 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || |||||||||||| Sbjct 291596 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291655 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 291656 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291715 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | |||||| | || || Sbjct 291716 ATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 291775 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || ||||| | || || || || || ||||| || Sbjct 291776 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 291825 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || || ||||||||| Sbjct 291368 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 291427 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 291428 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291487 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||| || || | |||||| | || || Sbjct 291488 ATGCCTTCCTTGTCCTGGATTTTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 291547 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 291548 TCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 >seq1140 Length=734468 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| ||||| | ||| | ||||| || | ||||||||||| ||||| || || ||| Sbjct 320508 GCCATCATCGAGTCTCAGACGGAAACGGGAACCCCGTACATGCTTTACAAGGATGCCTGC 320449 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || | || ||||| || ||| |||||||||| | |||||| |||||| | || Sbjct 320448 AATGGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATCCAGCAACCTGTGCACAGAG 320389 Query 8353 ATTGTACAGTACA 8365 || ||| |||||| Sbjct 320388 ATCGTAGAGTACA 320376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505360406675280