Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq265 459 4e-124 seq1140 89.7 7e-13 >seq265 Length=606166 Score = 459 bits (508), Expect = 4e-124 Identities = 1284/1955 (66%), Gaps = 29/1955 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| |||||| | || | || ||||| ||||| Sbjct 295606 TTCTTCATCTCTTCGCTCCACAGCCCCTGCTCCGTCAGGTCTTTGAGCAGATGAGGATTC 295665 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || ||||| | ||||| || ||||| || || ||||| || | ||| Sbjct 295666 ACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 295725 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | ||| || || || ||||| || || || || || || || ||||| || |||| || Sbjct 295726 ATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 295785 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | |||||| | ||| || ||||| || | ||||| ||| | ||| Sbjct 295786 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGCTTCCAGTCCAACAGA 295845 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 295846 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCT 295905 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | || || || || || ||||| | || || Sbjct 295906 TCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 295965 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || || | | || || || || || | || || || || Sbjct 295966 TAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGG 296025 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || ||||| ||||| || ||||| ||||| || || || || || Sbjct 296026 TAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGG 296085 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | || ||||| || | ||||| | ||||| || || || || || Sbjct 296086 CGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTC 296145 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCA 69249 | ||| ||| | ||||| |||| |||||| ||| ||||| || || Sbjct 296146 AAGTTTTTGACGATGACTTTGGTCACGGATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCA 296205 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || | || || |||||||| || |||||||| | Sbjct 296206 GGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCG 296265 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| | || ||||| || || || || | |||||| || |||||||| ||| Sbjct 296266 CTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGC 296325 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || |||||| ||| |||||||| ||||| || || |||| || || ||||| || Sbjct 296326 TGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTC 296385 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || || |||||||| | | ||| || | ||| || | || |||| | | | Sbjct 296386 TGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCC 296445 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || || |||||| || || ||| || || || || |||||| || |||| || Sbjct 296446 TCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCG 296505 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA--ACTCGTTTCATAA 69607 ||||| ||||| |||||||||| ||||| | | | | ||| |||| ||||| | Sbjct 296506 GGACACTCATTGGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGA 296563 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | | ||||| ||||| || || || ||| || ||||||| || | || || |||||| Sbjct 296564 ACAAGTCGGGGATCCACAGGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCT 296622 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || || || || || || | | ||| | ||||| || || || || || Sbjct 296623 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATG 296682 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | |||| |||| ||| || || ||||| || | || | || ||||| || || Sbjct 296683 GCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAA 296742 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 ||||||||||| || | | || || || || || ||||| || | ||| || || || Sbjct 296743 ACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCC 296802 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 ||| | || || | | | || |||||||| ||| || ||||| || ||| Sbjct 296803 GTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCA 296862 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | |||| ||||| || || || || ||||| || || ||||| || || || Sbjct 296863 CACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 296922 Query 69967 CAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| ||| | ||| | || || ||||| || | ||||| || ||||| || Sbjct 296923 CAGCTGGACAGCTGAGGCCTGT-TGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGT 296981 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGAT 70084 |||||| || || || ||||| ||||| || ||||| |||| || || ||| ||| | Sbjct 296982 GAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTG-T 297040 Query 70085 GAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTA 70144 | || || | | || | ||| | ||| ||||| || ||||| || ||| || | Sbjct 297041 GGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGA 297100 Query 70145 TTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTC 70204 | |||| |||||| || |||||||| || || ||||| ||||||| || ||||| | Sbjct 297101 TCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCGC 297160 Query 70205 TTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATT--TGGTAACTATATC---CAT 70259 ||| |||| || | || || || || || | | ||| || || || | | Sbjct 297161 GGTCGAAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCTGG--ACAATGTCGAGCGT 297218 Query 70260 AACAGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAA 70316 | | ||||| || ||||| ||||| || || || || |||||| | Sbjct 297219 CTCCTT---GGAGATCATGGGAGAGTGGCGTTT---GTTCAAGGGGTTGACGTAGTTGTA 297272 Query 70317 TAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGC 70376 | || ||||| || || || || | || || || || ||||| | ||||| | ||| Sbjct 297273 CAGGTCCTCCATCACTTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGTTTGAGACGGC 297332 Query 70377 TATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTC 70436 || | || || || || |||||||| || |||| || || ||| || || || || Sbjct 297333 GATCCGAGCGGCAAGGATTGCATAGTCGGGGTGTTTGGTTGTGAGAGTGGCGGCGATCTC 297392 Query 70437 CGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTT 70496 || || | ||| || | || | || || || ||| | || | || ||||| || || Sbjct 297393 AGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGAATCACCTT 297452 Query 70497 CATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAAT 70556 ||| | || | | ||||| | || || | |||||| || || || | || || Sbjct 297453 CATCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGGAT 297512 Query 70557 ACGAGATGTAATTTTATCAAACATAACATTCTCCT 70591 || || || |||||||| ||||| || ||||| Sbjct 297513 GCGGGAGGTGATTTTATCGAACATGACGCGCTCCT 297547 >seq1140 Length=734468 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || || || || ||||||| || ||||| || ||||| || ||||| Sbjct 320387 ATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCCA 320446 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || ||||| ||||||||||| || |||| || || ||||| ||||||| ||||| || Sbjct 320447 TTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGAGACTCGATGAT 320505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686857161630960