Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1327 102 6e-17 seq382 98.7 8e-16 seq954 96.9 3e-15 >seq1327 Length=1883937 Score = 102 bits (112), Expect = 6e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 |||||||| ||||| ||| |||| || ||||| ||||| |||| || | ||||||||| Sbjct 831820 TGTCAGTTCTACGTGTGCGATGGCGAGCTGTCGTGTCAGCTGTACCAGCGCTCAGGTGAC 831761 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || ||||| || || || || || || ||||| || || || || ||||| ||| Sbjct 831760 ATGGGCCTCGGGGTGCCTTTCAATATCGCCAGCTATGCGCTTCTTACCTACATGATCGCA 831701 Query 41196 CACGTTACC 41204 ||| | ||| Sbjct 831700 CACATCACC 831692 >seq382 Length=755248 Score = 98.7 bits (108), Expect = 8e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| |||||||||||| ||||||| ||||||| |||||||||||| || || ||||| | Sbjct 108446 CACCGTTGATGGTGAACTTGCTGTCCGTGTAGAGGACCAGCTTCTTTATGTTATTCTCTT 108387 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| | || |||||| Sbjct 108386 TGGCTTGTTCCAGCGCTTTGCAGGCTGCCTGG 108355 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 77308 CAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT 77367 || |||| | ||||||| || || || ||||||||||| |||||| |||||||| Sbjct 108683 CACCCAGGCCACCTCCACCTGTGCGTTCAGCCCGTCCAGCTTCACAAAGTCTTCCTTGTT 108624 Query 77368 GACAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTT 77427 || | | ||||| | |||||||||||||||| |||||||| |||| ||||| | Sbjct 108623 GATGATCGGACCTCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGGTCTTCACCCAGCT 108564 Query 77428 AGTCACACC 77436 |||||||| Sbjct 108563 GGTCACACC 108555 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| ||||||||||| ||| ||||| ||||||||||| | ||||| || Sbjct 107435 CTCCTCTGATGAACGCCCAGGCGTCTCTCTCTGACGCAAACTTCTTGTAAGTGGCTGATG 107376 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | || ||| | |||||||| ||||||||||||| Sbjct 107375 GAAACTTGACCACTTGGCTTTTACATTCATCCC 107343 >seq954 Length=278978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||| ||| || || ||| ||||||| || || || ||| |||||| |||||| Sbjct 90424 CCTGCTCCCATTTTGCTGAAGTCTCTCTTAGACTGGAAGGTGTAGGCTGTCAGTCCAGCA 90365 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||| ||||| || | || | | ||| || | ||||||||||||||||||||| Sbjct 90364 AACACTGCACAGGTCAGGAACAAGGCTTGCAGGACAATGGAGTATTCATAGAAGGTCA 90307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397426868214070