Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq265 221 2e-52 seq714 89.7 6e-13 seq1140 86.0 8e-12 >seq265 Length=606166 Score = 221 bits (244), Expect = 2e-52 Identities = 961/1491 (64%), Gaps = 42/1491 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| || | | ||| || || || | | ||||| |||| || || || || Sbjct 295608 CTTCATCTCTTCGCTCCACAGCCCCTGCTCCGTCAGGTCTTTGAGCAGATGAGGATTCAC 295667 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| ||| | ||||||||| | ||||| | ||| | Sbjct 295668 GATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 295727 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 295728 AGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 295787 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | ||| || || || | | |||||| | || Sbjct 295788 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGCTTCCAGTCCAACA-GAT 295846 Query 110854 C--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAAC 110909 | | || || || |||||||||| |||| || | |||||| ||| ||||| | Sbjct 295847 CGGTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACC--GGAGAGC 295903 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | || | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 295904 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 295963 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| ||||| || | |||| | || || || ||||| | Sbjct 295964 CGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACG 296023 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || || || || ||||||| | ||||||||| || | || || || |||| Sbjct 296024 GGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCAATTCCTATCGGCCTGT 296083 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 | ||| | || ||||| ||| || ||||| || || | || |||| || Sbjct 296084 GGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGT 296143 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAAAAGTGC 111206 | | |||||| || || | || | | ||| ||||||| | | |||||||| | Sbjct 296144 TCAAGTTTTTG---ACGATGACTTTGGTCACGGATGCTAGTTTTTTAAAGTCAAAAGTCC 296200 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | ||| |||| ||| | |||||||| || |||| ||| || || || || Sbjct 296201 G---CTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGACCGCTACCT 296257 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 | || | ||||| || | |||||||| || | |||| || || || || |||| Sbjct 296258 CGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCA 296317 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||| ||||| ||||| |||||| || || ||||| |||||||| ||||| || | Sbjct 296318 GATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGG 296377 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTG 111445 | || ||||| || | || ||| || | ||| || | | | | || || || ||| Sbjct 296378 TTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACACGC-TTG 296436 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA-CCCACCGCGTC 111504 ||| |||||| ||| || |||||||| |||||||||||| |||| | | || Sbjct 296437 ACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACAC-TC 296495 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCTTCCTCAAC 111561 | || || || || | ||||| | |||||||| ||| | |||| || Sbjct 296496 GTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---AC 296552 Query 111562 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 111621 | ||||||||| | ||| || |||||||||| | || || ||||| || ||| Sbjct 296553 TCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTC 296612 Query 111622 TTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 111680 || | ||| ||| || | | ||| ||||| || | | || |||||| |||| Sbjct 296613 CTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCACGGCT 296671 Query 111681 CAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCT 111736 | || || | |||| | ||| |||| | | || | || | ||||| || || Sbjct 296672 CCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG-CCGCCCTGGTCGACATAACGTGCC 296730 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| ||| | || | ||||| || | | || | ||| | || ||||| || | Sbjct 296731 GTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCA 296790 Query 111797 ATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCCCAC 111853 || || | | | ||| | || | || || || || || |||||| || Sbjct 296791 AT-GTAGCTCCCCGTTGATCTGATGCAGC--TGACCGCCACGCCGATTCCTCCAGCCGAC 296847 Query 111854 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 111913 |||||||| | ||||||| | | ||||| | ||||| || | ||| ||| ||||| Sbjct 296848 TTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTC 296907 Query 111914 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 111973 |||||| |||||||| ||||||| ||| || || ||||| ||||||||||| || Sbjct 296908 ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTA 296967 Query 111974 GGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032 || | ||||| ||||| || | | |||| | || ||| ||||| | | | | || Sbjct 296968 GGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTC 297026 Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||| | ||||||||| | | |||| ||||| ||||| ||| || Sbjct 297027 GATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGG 297077 >seq714 Length=827726 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| || ||||| |||||| ||||| ||||| || || | ||||| Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 | | |||||| || || |||||| || |||||||||||||||||||| Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCAC 573831 >seq1140 Length=734468 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||||| || ||||| || | |||| || || || |||| |||| ||| Sbjct 320375 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 320434 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||| ||||| ||||||||||| |||||||| || || ||||| |||||||| Sbjct 320435 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGA 320494 Query 111398 GATTTGAGAATAGCCTTCCA 111417 || | || || || | ||| Sbjct 320495 GACTCGATGATGGCATACCA 320514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984787694400