Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq265 196 6e-45 seq1140 95.1 1e-14 seq2005 89.7 6e-13 >seq265 Length=606166 Score = 196 bits (216), Expect = 6e-45 Identities = 929/1455 (64%), Gaps = 32/1455 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | |||| ||||| |||| ||| || || |||||| Sbjct 295702 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 295761 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | || || || Sbjct 295762 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCT 295821 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGT-CTCCCCCTGCCACATATCAAACTGGA 118359 || || ||| ||| |||| | || | || | | || |||||| || |||||| Sbjct 295822 TTCAGCAGCTTCC-AGTCCAACA-GATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGA 295879 Query 118360 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACCTCCG 118416 |||| || | | | || || || || | ||||| || ||||| |||| | | Sbjct 295880 GGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG---G 295936 Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476 ||| ||| |||||||||| ||||| |||| || || || ||||| || | |||| Sbjct 295937 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCA 295996 Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536 || |||||| | ||||||| | || || || || ||||||| | || Sbjct 295997 GCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAAC 296056 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596 |||| || || | || || || | || | | | || |||||| || ||| | Sbjct 296057 CTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTG 296116 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 |||| || || | ||||| | | | || | |||||| || || || || | || Sbjct 296117 GATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGG-AT 296175 Query 118657 GA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 | || |||| | |||||| | || ||| |||| ||| | |||||||| Sbjct 296176 GCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAGGGCGATG 296232 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || ||||||||||| || | ||| || | ||||| || | ||||| ||||| Sbjct 296233 GAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAG 296292 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || || || ||||||| |||| || || |||| ||| || || || Sbjct 296293 AGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCT 296352 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 ||||| |||||||| ||||| || || || || ||||||| || ||| || | ||| || Sbjct 296353 TTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACC 296412 Query 118896 TCGGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 | ||| ||| | || ||| | | |||||| | ||| || |||||||| Sbjct 296413 TGCTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTT 296471 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 |||||||| |||||| ||| ||||| || || || || || | ||||| Sbjct 296472 CTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGA 296531 Query 119015 CCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 119071 ||| ||| | ||| || | ||||||||| | ||| |||||||| || || | Sbjct 296532 CCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTA 296588 Query 119072 GAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 ||| || || | | | ||| || | | || || || || ||||| |||| Sbjct 296589 GAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 296647 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGA 119186 | | | || ||||||||| |||||||||| |||| | || ||| | | Sbjct 296648 CAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG- 296706 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| ||||| | || ||| ||| | || | ||||| || | | || Sbjct 296707 CCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCG 296766 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | || | ||| ||||| || ||| | | | ||||| | || | Sbjct 296767 TTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCC 296826 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 | || || || || ||| |||||||||| | || |||| | | ||| || ||||||| Sbjct 296827 ACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATG 296886 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || ||||| ||| |||| | |||| ||||||||||| |||| ||||||||| Sbjct 296887 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTG 296946 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTC 119485 ||||| || ||||||||||| || | |||||| ||||| || | | |||| | || Sbjct 296947 GTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTT 297005 Query 119486 GTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAA 119545 ||||||||| | | | ||| ||||| | ||| || || | || |||| ||| | Sbjct 297006 GTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAG 297065 Query 119546 CATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAA 119605 ||||| ||||| ||| || | || | || | || | ||||| | ||||| Sbjct 297066 CATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAG 297125 Query 119606 GGTCTTGAGACCAAA 119620 ||||||| ||||| Sbjct 297126 AGTCTTGAAGCCAAA 297140 >seq1140 Length=734468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||||| | |||| ||||| |||| ||| || || ||||| Sbjct 319463 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCAGTGGAA 319522 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| |||||||| Sbjct 319523 GCTGTGGGCATGGGGGCCAAGAGCAGGCTGTT 319554 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 |||||||||| || || ||||||| ||| || | | | |||||||||| ||||| | Sbjct 320375 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATT--TGATGGTGCCCAGGTTCTGCT 320432 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||| || || |||||||||||||||||||| || || ||||| ||||| | Sbjct 320433 GGTTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCT 320492 Query 118870 GGGACTTGAGAATAGCCTTCCA 118891 | |||| || || || | ||| Sbjct 320493 GAGACTCGATGATGGCATACCA 320514 >seq2005 Length=666128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 130850 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 130791 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || ||| || || |||||||||||||| |||||||| Sbjct 130790 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 130742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388709133840