Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq265 206 3e-48 seq714 93.3 5e-14 seq2005 89.7 6e-13 >seq265 Length=606166 Score = 206 bits (228), Expect = 3e-48 Identities = 920/1432 (64%), Gaps = 34/1432 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | || || | || || || | ||||| || | | | Sbjct 297077 CCCCAGCACATGCTCATGAGGGTTTCCGTTGGCATCCACAGAACGGACATCGACGCAGCC 297018 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| | || || ||||| Sbjct 297017 ATTGAGACCTACAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCGCCTACTCTCTT 296959 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| ||||| || || || ||||||| |||||||| |||||| ||||| || Sbjct 296958 CAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGA 296899 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || ||||| | ||||| | | ||||||| | |||||||||| |||||| Sbjct 296898 CAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATCTCAAAGTCGGCTGG 296839 Query 104461 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517 || || || || || | || | ||| | | | || ||| || || Sbjct 296838 AGGAATCGGCGTGGCGGTCA--GCTGCATCAGATCAACGGGGAGCTAC-ATTGCCGGCAC 296782 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||| || | ||| | || | | || ||||| | || | ||| ||| || || || Sbjct 296781 AAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTA 296722 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 ||| | || | || | | |||| ||| | |||| | || || ||||| |||| Sbjct 296721 TGTCGACCAGGGCGG-CAACAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGC 296663 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || || | | || ||||| ||| || ||| ||| | |||||| | || Sbjct 296662 ACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGGG 296603 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | || || |||| ||| || ||||| || || | |||||||||||||| ||| | Sbjct 296602 CCAGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGAGT---GGAAA 296546 Query 104754 GTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTG 104809 | | | |||||||| | ||||| | || || || || ||| || | | Sbjct 296545 GCAACCAAGACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGAGTGTTG-G 296487 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-AC 104868 |||||||||||||| || ||||| || ||| | || || ||| | ||| Sbjct 296486 GGTGAGGAGTTTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAGGGTCA-AGCGTGT 296428 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 |||| ||| | |||||| | || ||| || |||| || || || || || || || Sbjct 296427 GGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGCACGCC 296368 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 |||||||| |||||||||||||| |||| |||||| || || ||||| |||| || Sbjct 296367 GTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTGGGCACAAT 296308 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 ||| || ||| ||||| ||||||||| | |||| || | | || ||| || || Sbjct 296307 CAAAAGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGACGACGAGGTAGCGGT 296248 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 ||||| || || || ||||| ||| || ||| || || ||| ||| ||||| Sbjct 296247 CTGTAATCTGGCCTCCATCGCCCTCAACATGTACGTCACCCCTGAG---CGGACTTTTGA 296191 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | | ||||||| || || ||| || ||||||| | |||| | || || Sbjct 296190 CTTTAAAAAACTAGCATCCGTGACCAAAGTCATCGTCAAAAACTTGAACAAGATCATCGA 296131 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || || || || || || || || || | | | ||| | || || || Sbjct 296130 GATTAACTTCTATCCAGTGCCCGAAGCGGAGAAGTCCAACAAGCGCCACAGGCCGATAGG 296071 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 | || ||||| ||| | ||||||| ||||| || || || | ||||| | Sbjct 296070 AATTGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGATGCGTTACCCGTTTGAAAGCCC 296011 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| ||| || | || | |||||||||||||| || ||||||| || ||||| Sbjct 296010 CGAGGCGCAGCTGCTGAACATCCAAATATTTGAGACCATCTACTACGCCGCCCTGGAGGC 295951 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 ||| | ||| |||| | | || || || || || | || || ||||| | || Sbjct 295950 GAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCGG--TC 295893 Query 105409 A-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACTG 105465 | |||||| | || || | || ||||||| || || | ||| || | |||| Sbjct 295892 AGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACCGATCTGTTGGACT- 295835 Query 105466 GGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTC 105524 ||||||| || || || ||| | | || | | ||||| || || |||| | Sbjct 295834 GGAAGCTGCTGAAAGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGGCCC 295775 Query 105525 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 105584 | ||||| || |||||||||||||| ||| |||| || || || | | ||| |||||| Sbjct 295774 CGATGCCCACGGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCTATCGAAGCCTACA 295715 Query 105585 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 | | |||||||| | ||| |||| | ||||||||| ||| || || Sbjct 295714 CCAGCAACATCTACACCCGCAGAGTCCTCTCTGGAGAGTTTCAGATCGTGAA 295663 >seq714 Length=827726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||| ||||| | || || || || ||||||||||||||||| || || ||| || Sbjct 573855 GAGAGACTCGTGGCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCC 573796 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || ||||||||||||||| |||| || ||||| ||||| ||||||||| ||||| || Sbjct 573795 ATCTATTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTTACCTTCTCCAATGAGCTGAT 573737 >seq2005 Length=666128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 130742 GTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGGC 130801 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 130802 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 130850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216953369360