Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq265 295 7e-75 seq2005 104 3e-17 seq714 89.7 6e-13 seq1140 87.8 2e-12 >seq265 Length=606166 Score = 295 bits (326), Expect = 7e-75 Identities = 935/1431 (65%), Gaps = 49/1431 (3%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| | |||| || ||||||||| |||| |||||| ||||| || Sbjct 295701 GTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGA 295760 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 ||| || ||||| || || | ||| || |||| | ||||| | ||||| | Sbjct 295761 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTC 295820 Query 78654 CTTTAGG------CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 || || | |||| | | || | | || || |||||||||| || || Sbjct 295821 TTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 295880 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 ||| |||| | |||| || || | | |||||||||| | || ||| ||| || Sbjct 295881 GATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAG 295940 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 ||||| | | |||||| |||| ||| | | ||| || || |||| ||| Sbjct 295941 CTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAG 296000 Query 78828 GCGCGCCTTGGTCTCGTCGAACGA--AAGGCCGAGCATCATGAAGACATCGGCCAGGCCC 78885 |||||| || || |||| || || | || |||||| |||| |||| || Sbjct 296001 CTGCGCCTCGGGGCTTTCAAACGGGTAACGC--ATCAGGATGAAGGCATCCGCCAAACCT 296058 Query 78886 TGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC--- 78942 || ||||| || | ||||| | ||||||| ||||| ||| |||| |||| | Sbjct 296059 TGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCT---CCGCTTCGGGCACT 296115 Query 78943 GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCG 79002 || || ||||| ||||||| ||||| ||| || ||| ||||| Sbjct 296116 GGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGAT 296175 Query 79003 TACAATTTGGCGAAATCAAAATGATTTCCTTTGATGAAAGTCG-----GT--AGGCACAG 79055 | ||| || |||||| ||| | | | | || || ||| | Sbjct 296176 GCTAGTTTTTTAAAGTCAAAAG----TCCGCTCAGGGGTGACGTACATGTTGAGGGCGAT 296231 Query 79056 CGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCA 79115 || ||||| || || || || |||||| ||| | || | |||||||||||| Sbjct 296232 GGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCA 296291 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 | || ||||| ||||| | |||| |||||||||||| ||| |||||||| Sbjct 296292 GAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTC 296351 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235 ||||| |||||||||||| ||||| || ||| || || || | ||| ||| | Sbjct 296352 TTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAC 296411 Query 79236 GTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTC 79295 | | | ||| || || |||| || |||| | || | ||| | || Sbjct 296412 CTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTT 296471 Query 79296 GTTGAAAGCCTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | || |||| || | ||| ||| ||| || || ||||| | || |||||||| Sbjct 296472 CTCAAACTCCTCACCCCA-ACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAG 296530 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 |||||| | || | || || ||| |||||| | ||| |||||||||||||| || Sbjct 296531 ACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGA 296590 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | ||||| | | | | |||||| | || |||| |||||| || ||||| | Sbjct 296591 AAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAA 296650 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 | ||| ||||||||||||||| || |||||||| | || | ||| ||||| Sbjct 296651 ACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGC 296710 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||||| ||| || || |||||||||||| |||||| |||||||| || | |||| | Sbjct 296711 CCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTG 296770 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC-GA-GCAGTGGAT 79652 | |||||| || ||| || ||| |||| |||| || || || |||| || Sbjct 296771 AGTTGCCGTTTGTGCCGGCAAT----GTA--GCTC-CCCGT-TGATCTGATGCAGCTGAC 296822 Query 79653 T------CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706 ||||| || || | | |||| |||||| | || |||| ||| || || ||||| Sbjct 296823 CGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTA 296882 Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTT 79766 |||||| ||||| |||||||||||| |||| |||||||||||| |||| ||| || | Sbjct 296883 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCT 296942 Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAG 79826 ||| |||||||| |||||||| || |||| ||||| ||||| |||| | || ||| Sbjct 296943 GTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 297002 Query 79827 ATCGTACGTCTCCTTGAC-GCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885 | ||| ||||| || | ||| || ||| | ||||||||| || | || | || Sbjct 297003 GTTGTAGGTCTCAATGGCTGCG-TCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCA 297061 Query 79886 TGAAGAGGTACTGGGG-CGTCTCGCCGACATTCAGGTAGCCCTTCTGCAGG 79935 ||| | || |||||| ||| ||| | || || || | |||| ||||| Sbjct 297062 TGAGCATGTGCTGGGGACGT-TCGGCCACTTTGCCGTTGATCTTCAGCAGG 297111 Score = 215 bits (238), Expect = 6e-51 Identities = 850/1333 (64%), Gaps = 47/1333 (4%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| ||||| |||| || || ||||| Sbjct 297014 GAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCGCCTACTCTCTTCAAT 296955 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 |||||||| |||| || ||| |||| ||||| ||||| | || |||||||| |||||| Sbjct 296954 GCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGC 296895 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || ||||||||||| || || ||| |||| || | |||||| |||| | | || || Sbjct 296894 ATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATCTCAAAGTCGGCTGGAGGA 296835 Query 19346 ATCGG------GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 ||||| | || |||| ||| | || | || | || || || Sbjct 296834 ATCGGCGTGGCGGTCAGCTGC------ATCAGATCAACGGGGAGCTACATTGCCGGCACA 296781 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| | |||| | ||||| ||||| | || | |||||||||||| | || Sbjct 296780 AACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTAT 296721 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| ||||||| ||| |||| | || | |||||||| ||||| ||||| |||||| Sbjct 296720 GTCGACCAGGGCGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCAC 296661 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 ||||| | || ||||| || ||| |||| || | |||||| | | Sbjct 296660 TTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGGGCC 296601 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 | ||||| ||| ||| ||||||| || ||| | |||||| ||| || || | || Sbjct 296600 AGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGAGTGGAAAGCAAC 296541 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAG 19699 |||| ||| |||||||| || | || || || || || ||| | || ||| Sbjct 296540 CAAGACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGAGTGTTGGGGTGAG 296481 Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGG 19759 | ||| | || | ||| | || | |||| || ||||| ||||| | Sbjct 296480 GAGTTTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAG 296421 Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819 || | | | || ||| || | | || | |||| || |||||||| ||||||||| Sbjct 296420 GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGCACGCCGTACATG 296361 Query 19820 TGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCG 19879 ||||| |||||| ||| ||| || ||| |||| | ||| | ||||| Sbjct 296360 CTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTGGGCACAATCAAAAGC 296301 Query 19880 TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAAT 19939 |||||| || || |||||| | || ||| |||||| || || |||||| Sbjct 296300 AGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGACGACGAGGTAGCGGTCTGTAAT 296241 Query 19940 CTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTGC 19992 ||||| ||| | ||| | | ||||| | ||| | || |||||| Sbjct 296240 CTGGCCTCCATCGCCCTCAACATGTACGTCA----CCCCTGAGCGGACTTTTGACTTTAA 296185 Query 19993 CAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAA 20052 ||| | |||||| ||| || || |||| ||||||| || Sbjct 296184 AAAACTAGCATCCGTGACCAAAGTCATCGTCAAAAACTTGAACAAGATCATCGAGATTAA 296125 Query 20053 CTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGAT 20109 ||| || || | |||| |||| | ||||| || | ||||||| ||||||| | || Sbjct 296124 CTTCTATCCAGTGCCCGAAGCGGAG---AAGTCCAACAAGCGCCACAGGCCGATAGGAAT 296068 Query 20110 CGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAA 20169 ||||| || || |||| || | ||||| || | | | | || || ||| | Sbjct 296067 TGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGATGCGTTACCCGTTTGAAAGCCCCGA 296008 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 ||||| ||| |||| || || ||| || | ||| |||| || |||||| | Sbjct 296007 GGCGCAGCTGCTGAACATCCAAATATTTGAGACCATCTACTACGCCGC---CCTGGAGGC 295951 Query 20230 G---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC 20286 | ||||| || ||| ||| |||||| |||||||||| | | || || || | Sbjct 295950 GAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCGGTCAG 295891 Query 20287 CGAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGAGAATGAGTT---TTG 20337 | |||| ||||||||| ||||||||| | || ||| | || ||| || Sbjct 295890 CAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCG---ATCTGTTGGACTG 295834 Query 20338 GAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 || || || | ||||| | || || | | ||| |||| | || || Sbjct 295833 GAAGCTGCTGAAAGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGGCCCC 295774 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 ||||| || ||||| ||||| |||||| |||| ||||||||| || |||| | ||||| Sbjct 295773 GATGCCCACGGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCTATCGAAGCCTACAC 295714 Query 20458 GACCAACATCTAC 20470 | |||||||||| Sbjct 295713 CAGCAACATCTAC 295701 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 78226 TTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATG 78285 ||||| ||||| | |||||| || | ||| ||| | |||| | | | ||| |||| Sbjct 295310 TTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATG 295369 Query 78286 TTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGAC 78345 || || |||||| |||||||||| | || ||||||||||| ||||| | || || | | Sbjct 295370 TTCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTC 295429 Query 78346 TTTTGCGGAATCTCCCAGATGGT 78368 || || | |||||||| | ||| Sbjct 295430 TTCTGGGAGATCTCCCACACGGT 295452 >seq2005 Length=666128 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || ||| ||| || |||||||| || ||| | || Sbjct 130741 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 130800 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| |||||||||||||| || | | ||||||| Sbjct 130801 CCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 130850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| ||| || |||| || |||||| Sbjct 132571 ATCTACCGGGTGGAGAACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACC 132630 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||| |||||||||||||| || || Sbjct 132631 AACTTCTTCGAGAAGCGGGTCGGAGAGTA 132659 >seq714 Length=827726 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 ||| | ||||| ||| ||||| || ||||||||||| ||||| ||| ||| || | Sbjct 573849 CTCGTGGCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCCATCTAT 573790 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 |||||||| ||| | || || ||||| || || | |||||||| ||||||||| | || Sbjct 573789 TGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTTACCTTCTCCAATGAGCTGATTAGCAGG 573730 Query 60105 GACGAGG 60111 || |||| Sbjct 573729 GATGAGG 573723 >seq1140 Length=734468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| |||||||||| || || ||||||||||| | ||||| ||||||||| Sbjct 320380 CTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCT 320439 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| | || ||||| |||||||| ||||||||| || || || || Sbjct 320440 CTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTC 320487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548483564648160