Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq265 178 1e-39 seq1140 91.5 2e-13 seq584 82.4 8e-11 >seq265 Length=606166 Score = 178 bits (196), Expect = 1e-39 Identities = 466/702 (66%), Gaps = 12/702 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| |||| || || ||||| || ||||| || |||||| || Sbjct 296990 AAGTGGTTCACCCACGCCTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTG 296931 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||| ||| ||||| ||||||||||| || || Sbjct 296930 TCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTG 296871 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| ||||||||| |||||| |||| | | || || ||||| | | ||| | Sbjct 296870 AAGCAGTGTGCCCTCATCTCAAAGTCGGCTGGAGGAATCGGCGTGGCGGTCAGCT---GC 296814 Query 53444 GTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 || | | ||||| | | || || || |||||| | | | || | || || Sbjct 296813 ATCAGATC-AACGGGGAGCTACATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCC 296755 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| | || | |||||||||||| || || ||| ||||||| || || | Sbjct 296754 CATGCTGAGAGTTTACAACAACACGGCACGTTATGTCGACCAGGGCGGCAACAAAAGACC 296695 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 || | |||||||| ||||| |||||||||||| ||| | | || || || ||||| Sbjct 296694 CGGAGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTTGACTTCCTGGAGCT 296635 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681 | ||| || | || ||| | | | | ||||| || ||| || ||||||| Sbjct 296634 GAAGAAGAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTAC-GCCCTGTGGA 296576 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | || ||| | |||||| | | ||||| | || | || |||| |||||||| || | Sbjct 296575 TCCCCGACTTGTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCA 296516 Query 53742 ACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG 53800 | ||||| ||||| || | | |||| | |||||||||||| | || | || | Sbjct 296515 ATGAGTGTCCCGGGCTGGACGAGTGT-TGGGGTGAGGAGTTTGAGAAGCTCTACACTTCA 296457 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 || | |||| | |||| ||| ||||| | |||| ||| | || || Sbjct 296456 TATGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATT 296397 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 || || |||| || || || |||||||||||| ||||| || | |||| Sbjct 296396 ATCGAGTCCCAGACAGAAACCGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACCGA 296337 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| |||| | ||| |||||| |||||| Sbjct 296336 AAGAGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCAAC 296295 >seq1140 Length=734468 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| ||||| | || | ||| |||| ||| || || ||| ||| |||||||| || Sbjct 320533 GGTGAAGGCTCAGCAGCTGTGGTATGCCATCATCGAGTCTCAGACGGAAACGGGAACCCC 320474 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949 ||||||| ||||||||| | ||| | ||||||||||||| ||||| | ||| ||| Sbjct 320473 GTACATGCTTTACAAGGATGCCTGCAATGGGAAGAGCAACCAGCAGAACCTGGGCACCAT 320414 Query 53950 CAAATCGAGCAAC 53962 |||||| |||||| Sbjct 320413 CAAATCCAGCAAC 320401 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 319549 CCTGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCACAGATCCTGGGCAACAACGAGTC 319490 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 | ||||| ||||| | |||||||||| ||| || || |||| |||||| Sbjct 319489 CATTGAGCCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCAGGAGAGTTT 319435 >seq584 Length=624194 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| |||||||| ||||| || | || |||||||| || Sbjct 151093 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTGCCTCCGTTGATGCGAGTACCGAACTGA 151152 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | ||||| ||||| |||||||||||| || |||||||| || Sbjct 151153 CCCAGTGGCTGCAGTATGTTCACATTGTTACTGCCCACAAAGTTCTGGGCCAAGTTCACG 151212 Query 117425 ATCGT 117429 || || Sbjct 151213 ATGGT 151217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174863037200