Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq265 214 2e-50 seq1532 181 1e-40 seq1833 178 1e-39 seq1140 86.0 7e-12 seq584 84.2 2e-11 >seq265 Length=606166 Score = 214 bits (236), Expect = 2e-50 Identities = 827/1280 (65%), Gaps = 61/1280 (5%) Strand=Plus/Plus Query 80412 CTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGA 80471 ||||||||| || |||||||| || ||| ||||| ||||||||| | | || ||| Sbjct 295731 CTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 295790 Query 80472 ATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGACCAAAAATCAACCCCAA 80530 |||| || ||| || || ||| | ||| || | || | | || | | | Sbjct 295791 GTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGCTTCC----AGTCCAACAGAT 295846 Query 80531 CGCTGTGAC------CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCC 80582 || || | |||||||||||| ||| | |||||||| | ||| |||||| || Sbjct 295847 CGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGAC--CGGAGAGCC 295904 Query 80583 CGCGAACGTCTCGTACGGGCC---CTCCGTCTTGGCCAGCTCACA---CGACTCCATAAG 80636 || |||||||||| ||||| ||| | ||||||||| || || ||||| | Sbjct 295905 TTCGTACGTCTCGTAGGGGCCGAGCTCAGC---GGCCAGCTCGCAGCTCGCCTCCA---G 295958 Query 80637 GGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGT 80695 ||| |||| || ||| |||||| | |||||| | || |||||| ||| | Sbjct 295959 GGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAG-CAGCTGCGCCTCGGGGCTTT 296017 Query 80696 CGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCG 80755 | |||| | | ||||| ||||| | || |||| || |||||||| || | |||| Sbjct 296018 CAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCAATTCCTATCG 296077 Query 80756 GGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGA 80815 | | |||||||||||| || ||| || || || | ||| || |||||| | ||||||| Sbjct 296078 GCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGA 296137 Query 80816 CGCGGTTCAGGTTGCGTGTAAC---AACCCGTGTAACATCATG-AAGTTTCTGAAAGTCG 80871 ||||| ||| | | || || || || ||| ||||| | |||||| Sbjct 296138 TCTTGTTCAAGTT---TTTGACGATGACTTTGGTCAC-GGATGCTAGTTTTTTAAAGTCA 296193 Query 80872 AATTGGTTCCCCTTCACAAATGCCGGA-------AGGCTCAGGGACGCCAGATTGCACAC 80924 || || || ||| || || | ||| | ||| |||||||| || || Sbjct 296194 AA--AGT--CCGCTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGAC 296249 Query 80925 GGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAAT 80984 || ||||| || | || | || |||||||| ||||| | || || || Sbjct 296250 CGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGAT 296309 Query 80985 TGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGG 81044 ||| ||||| || | |||||| ||| |||||| ||||| ||||| ||||||||| Sbjct 296310 TGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGG 296369 Query 81045 GGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || ||||| || ||| |||| || ||||||| ||| | || | ||||| ||||| Sbjct 296370 CGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCAC 296429 Query 81105 ---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCAC 81160 ||| || | || || | |||| | ||| |||||| || |||| ||| Sbjct 296430 ACGCTT---GACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTC-TCAAACTCCTCAC 296485 Query 81161 CGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGT 81220 | | || || | || ||||| || || |||||||| |||||| || | Sbjct 296486 CCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGC 296545 Query 81221 TCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGC 81280 | || || ||||||||| ||| |||||||| |||||| ||| ||||| | | | Sbjct 296546 TTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCC 296605 Query 81281 GCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCC 81340 | |||||| | || ||| || ||| || ||||| | | ||| |||| Sbjct 296606 TCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCC 296665 Query 81341 ATGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGGCCACCCTGGTTGACGTAA 81396 | |||||||| |||| ||||| | || ||| | ||| ||||||| ||| ||| Sbjct 296666 ACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG-TTGCCGCCCTGGTCGACATAA 296724 Query 81397 CGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTA 81456 || || || ||| | || | || ||| |||| | || | ||| | ||||| || Sbjct 296725 CGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTG 296784 Query 81457 CCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGAC 81516 || | || |||| | | | | ||||| | | ||||| || || | | Sbjct 296785 CCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCC 296844 Query 81517 CACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTT 81576 ||||||| || | |||||| | |||| || || || || || |||||||| || | Sbjct 296845 GACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCC 296904 Query 81577 TTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGT 81636 |||||| | |||| ||| ||||| |||| |||||| || || | ||||||||||| || Sbjct 296905 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGA 296964 Query 81637 GTTGGGGTCGCGTGAATGAA 81656 || || | ||||| |||| Sbjct 296965 GTAGGCGAGGCGTGGGTGAA 296984 >seq1532 Length=669350 Score = 181 bits (200), Expect = 1e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| |||||||| || || || ||||||||| | | Sbjct 291594 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 291535 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||| |||||||| ||||||||||| || ||||| || |||||| Sbjct 291534 GACACCATTGAGAACGTGAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 291475 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| || ||||| | ||||| ||| Sbjct 291474 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAT 291415 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| |||||||| ||| ||||||| Sbjct 291414 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCT 291377 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || |||||||| ||| | | Sbjct 291822 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 291763 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | |||||||| || ||||| ||||| || ||||| || |||||| Sbjct 291762 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 291703 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 291702 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291643 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| |||||||| ||| ||||||| Sbjct 291642 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCT 291605 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||| | | Sbjct 291366 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 291307 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | |||||||| || ||||||||||| || ||||| || ||| || Sbjct 291306 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAAG 291247 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 291246 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291187 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| ||||| || || || ||| ||||||| | || || ||| Sbjct 291186 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGCGGTCAA 291136 >seq1833 Length=1844611 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||| ||||| || || || ||||| ||| | | Sbjct 459713 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459772 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||||||||| || ||||| |||||||| || |||||||||||| Sbjct 459773 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459832 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| |||||||| ||||||| || ||||| | ||||| || Sbjct 459833 CAGCGTCTCATCTTCGCTGGAAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAAC 459892 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || | ||||| Sbjct 459893 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCT 459930 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||| | | Sbjct 459485 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459544 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||| || |||||||||||||| || |||||||||||| Sbjct 459545 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 459604 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || || | ||| || || | ||||| || Sbjct 459605 CAGCGTCTCATCTTCGCTGGAAAGCAGCTAGAAGACGGTCGCACTCTCTCCGACTACAAC 459664 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || | ||||| Sbjct 459665 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCT 459702 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| || || | ||||| ||| | | Sbjct 459257 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCCCAGC 459316 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | |||||||| || ||||| |||||||| || |||||||||||| Sbjct 459317 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459376 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || || || |||||||||| || ||||| | ||||| || Sbjct 459377 CAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 459436 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || | ||||| Sbjct 459437 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCT 459474 >seq1140 Length=734468 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||||| || || || || || |||||||| | |||||| Sbjct 320379 ACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGC 320438 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| | ||||| || |||||||| |||||||||||| || || || ||| |||| Sbjct 320439 TCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGAGACT 320498 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||| | ||| | || | ||||| ||||| Sbjct 320499 CGATGATGGCATACCACAGCTGCTGAGCCTTCACCAC 320535 >seq584 Length=624194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| || ||| | || ||||||||||| || || || ||||| |||| ||||| Sbjct 151217 ACCATCGTGAACTTGGCCCAGAACTTTGTGGGCAGTAACAATGTGAACATACTGCAGCCA 151158 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 || ||||| || || || || ||| ||||| |||||||| ||| | ||||||||| Sbjct 151157 CTGGGTCAGTTCGGTACTCGCATCAACGGAGGCAAAGATGCTGCCAGCCCTCGTTACATC 151098 Query 32245 TTCACC 32250 |||||| Sbjct 151097 TTCACC 151092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267526915680