Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1327 165 7e-36 seq657 98.7 8e-16 >seq1327 Length=1883937 Score = 165 bits (182), Expect = 7e-36 Identities = 141/174 (81%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 831687 AGTCCGGTGATGTGTGCGATCATGTAGGTAAGAAGCGCATAGCTGGCGATATTGAAAGGC 831746 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| |||||||| || || | |||||| ||||||||||| ||||| || |||| | Sbjct 831747 ACCCCGAGGCCCATGTCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 831806 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| |||||||||| ||||||||| || || |||||||||| | || |||| Sbjct 831807 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTCT 831860 Score = 141 bits (156), Expect = 8e-29 Identities = 136/173 (79%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| ||||||||||| || || || ||||||||||| |||||||| ||||||||||| Sbjct 832532 CATGTTTGTGTACTCTGCCCCAAAGTGTCTCCACTGGAAACCGTACACGGGTCCCAGGTC 832591 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || || | | ||| || ||||||| ||||||| || |||||||| || Sbjct 832592 GCCTTCCTCTCTATCCGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCTTC 832651 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 ||| ||||| || || |||||||||||||| |||| ||||| || || |||| Sbjct 832652 CCAAATCTTCACTCCTTTCTCAGAGAGCTCCTTGGCATTTGTTGATCC-CTGA 832703 >seq657 Length=859816 Score = 98.7 bits (108), Expect = 8e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 110560 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCG 110619 ||||| |||||||||| ||||| | ||| ||||||||||| |||| ||| |||||| | Sbjct 54386 AGTCTAACAGGATGCCATGGCAGCTTTCCATTGTTCCCGATACCCAGGTCAGGACACACC 54445 Query 110620 GCCACGATACCGTTCAGAATGAGGGGCAT 110648 ||||| ||||||||||||||| ||| ||| Sbjct 54446 GCCACAATACCGTTCAGAATGCGGGACAT 54474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406280619225288