Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1532 123 2e-23 seq1833 95.1 1e-14 >seq1532 Length=669350 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || ||||| || || || Sbjct 291823 CATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 291764 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || || || |||||||| || || || || Sbjct 291763 CGACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 291704 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||||||||| | ||||| | ||| | ||||| ||||| Sbjct 291703 GCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 291644 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | ||| | || ||||| || |||| || || Sbjct 291643 CATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGGTAT 291593 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || || || || || || | Sbjct 291594 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 291535 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||||| || ||||| |||||||| || || || || Sbjct 291534 GACACCATTGAGAACGTGAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 291475 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||| | ||||| | ||| | ||||| ||||| Sbjct 291474 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAT 291415 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || ||||| || |||| || || Sbjct 291414 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGGTAT 291365 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || || || | Sbjct 291366 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 291307 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || ||||| |||||||| || || || | Sbjct 291306 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAAG 291247 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||||| | ||||| | ||| | ||||| |||||| Sbjct 291246 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291187 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| ||| | || | || ||||| | |||| || Sbjct 291186 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGCGG 291140 >seq1833 Length=1844611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || || | || ||||| || | Sbjct 459257 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCCCAGC 459316 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || || || || ||||| || || || || Sbjct 459317 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459376 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||| | || || | ||| | ||||| |||||| Sbjct 459377 CAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 459436 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || | ||| || | || || || Sbjct 459437 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGGTAT 459486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434885705009280