Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1327 131 2e-25 >seq1327 Length=1883937 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| ||||||||||||||||||||||| ||||| || || |||| |||||| ||||| Sbjct 832542 TACTCTGCCCCAAAGTGTCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCTTCCTCT 832601 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | |||||| | |||||||| |||||||||||||||| || ||||| |||||| Sbjct 832602 CTATCCGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCTTCCCAAATCTTC 832661 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || ||||||||||||| Sbjct 832662 ACTCCTTTCTCAGAGAGCTCCTTGG 832686 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 ||||||||||||| || |||||||| ||||| || |||||||||||||||| | Sbjct 832686 CCAAGGAGCTCTCTGAGAAAGGAGTGAAGATTTGGGAAGCCAACGGGTCTCGAGACTTCC 832627 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||| | |||||| | | | ||||| |||||| |||| || || ||||| |||| Sbjct 832626 TGGACAATCTCGGGTTCACGGATAGAGAGGAAGGCGACCTGGGACCCGTGTACGGTTTCC 832567 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||||||||||||||| ||||| Sbjct 832566 AGTGGAGACACTTTGGGGCAGAGTA 832542 Score = 114 bits (126), Expect = 1e-20 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || || || || || || ||||| |||||||| | ||| Sbjct 831699 TGTGCGATCATGTAGGTAAGAAGCGCATAGCTGGCGATATTGAAAGGCACCCCGAGGCCC 831758 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| || || || || || ||||| || |||||||| ||| |||| |||||||| || Sbjct 831759 ATGTCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCA-TCGCACACGTAGAACTG 831817 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 || |||| |||||| ||||| || ||||| Sbjct 831818 ACACAGGGCGTGGCAGGGGGGCAGAGCCAT 831847 Score = 114 bits (126), Expect = 1e-20 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAATGGGGAGCTGTC 34635 ||||| || ||||| |||||| |||| || || |||||||| |||| ||| |||||||| Sbjct 831847 ATGGCTCTGCCCCCCTGCCACGCCCTGTGTCAGTTCTACGTGTGCGA-TGGCGAGCTGTC 831789 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 || ||||| || || || || || |||||||| | |||||||| ||||| || || || Sbjct 831788 GTGTCAGCTGTACCAGCGCTCAGGTGACATGGGCCTCGGGGTGCCTTTCAATATCGCCAG 831729 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || ||||||||||| || Sbjct 831728 CTATGCGCTTCTTACCTACATGATCGCACA 831699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228701874080