Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1833 118 9e-22 seq1532 98.7 9e-16 >seq1833 Length=1844611 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||| | ||| || ||| ||| || || || || || |||| Sbjct 459483 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459424 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||||||||| ||||| || |||||||||||||| | || Sbjct 459423 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGG 459364 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| || ||| ||| || |||| || | | || ||||| | |||||| Sbjct 459363 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 459304 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| ||||| | ||||| |||| || || |||||||| |||||||| Sbjct 459303 TCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 459254 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||| | ||| || ||| ||| || || || || || |||| Sbjct 459939 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459880 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || ||||| || || || || || || |||||||||||||| | || Sbjct 459879 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459820 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| || ||| ||| || || | || | | || ||||| | |||||| Sbjct 459819 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 459760 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| ||||| || || |||||||| ||||| Sbjct 459759 TCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | || || ||| ||| || || || || || |||| Sbjct 459711 CCTCCCCTCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459652 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || || || || |||||||||||||| | || Sbjct 459651 AGAGTGCGACCGTCTTCTAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459592 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| | | | || ||||| | |||||| Sbjct 459591 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 459532 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| ||||| || || || ||||| ||||| Sbjct 459531 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 >seq1532 Length=669350 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || ||||| || |||| || || || | || |||||||| Sbjct 291391 ATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTG 291450 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| ||||| || || | ||||||||| | ||| | || || |||||| |||||| Sbjct 291451 TTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTT 291510 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||| | || | | || ||||| | ||| || |||| ||||| | || || || Sbjct 291511 AGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 291570 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 291571 AAGGGTCTTGACGAAGATCTGCAT 291594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || |||| || || || | || |||||||| Sbjct 291619 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTG 291678 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| ||||| || || | ||||||||| | ||| | || || || ||| ||| || Sbjct 291679 TTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTT 291738 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| || | | || ||||| | ||| || || | ||||| | || || || Sbjct 291739 AGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGT 291798 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTT 39288 || || || |||||||| ||||| ||| Sbjct 291799 GAGGGTCTTGACAAAGATCTGCATGTTT 291826 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || |||| || || || | || ||||||||| Sbjct 291164 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGT 291223 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || || | ||||| ||| | ||| | || || |||||| ||| || Sbjct 291224 TTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTA 291283 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| || | | || ||||| | ||| || |||| ||||| | || || || Sbjct 291284 GCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTG 291343 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 291344 AGGGTCTTGACGAAGATCTGCAT 291366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429514116186782