Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1327 159 3e-34 seq657 98.7 8e-16 >seq1327 Length=1883937 Score = 159 bits (176), Expect = 3e-34 Identities = 133/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||| ||| || |||||||| || || || | ||||||||||| || || ||| Sbjct 831687 AGTCCGGTGATGTGTGCGATCATGTAGGTAAGAAGCGCATAGCTGGCGATATTGAAAGGC 831746 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| |||||||| ||||| | |||||| ||||| ||||| ||||| || |||| | Sbjct 831747 ACCCCGAGGCCCATGTCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 831806 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGA 29876 ||||| |||||||||| ||| ||||| || || || ||||||| Sbjct 831807 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGA 831849 Score = 116 bits (128), Expect = 3e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || ||||||||||| |||||||| ||||||||||| || || || || | | ||| Sbjct 832554 AAGTGTCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCTTCCTCTCTATCCGTGAAC 832613 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||||| || |||||||| ||||| ||||| || || ||||| Sbjct 832614 CCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCTTCCCAAATCTTCACTCCTTTCTCA 832673 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 |||||||| |||| ||||| || || |||| Sbjct 832674 GAGAGCTCCTTGGCATTTGTTGATCC-CTGA 832703 >seq657 Length=859816 Score = 98.7 bits (108), Expect = 8e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| || |||||||| ||||| | ||| ||||||||||| |||| ||| |||||| | Sbjct 54386 AGTCTAACAGGATGCCATGGCAGCTTTCCATTGTTCCCGATACCCAGGTCAGGACACACC 54445 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCAT 114531 ||||| ||||||||||||||| ||| ||| Sbjct 54446 GCCACAATACCGTTCAGAATGCGGGACAT 54474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406133430014404