Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1885 192 4e-44 seq1327 161 7e-35 >seq1885 Length=341270 Score = 192 bits (212), Expect = 4e-44 Identities = 235/321 (73%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 68997 CACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTAT 69056 ||| || | ||||||| || ||| ||||| |||||| | | || ||||| || Sbjct 163456 CACTTAAAGAGTCCAGCTGGCGCCACGCTGACGATAGGAAACCTGGATGACACCATATAC 163397 Query 69057 AAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACG 69116 ||||| | |||| || |||||| || |||||||| || || |||| | | || | Sbjct 163396 AAAGAGAAGCCTAGAGAGGTGAATGGGTGGGGAAAATTCTACCTCCCTAACATAGTAAAC 163337 Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 |||||||| || ||| ||| |||||| | | || |||||||||||||| |||||| Sbjct 163336 ATGCAGGTTATAGGTGTAGTGGAGGGAACCTCGTGCCCGTGTGACCAGCTTGTTCTGATG 163277 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAAC 69236 ||||| |||||| || || ||||||||||| ||||| ||||||||||| |||||| Sbjct 163276 ACCTGTGAGGACACAAAAGTTTACGGCTATGATGGAGAAGAGCTGCATGTCGTGGCTGCA 163217 Query 69237 TGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCAT 69296 | ||| || || | | | || || |||| ||||| |||| | |||||||||| | Sbjct 163216 AGCCTGAATGAGCTAGTTCACGAGGGGATAGAGTATCCAGCATCCAAGAGCTATTACAAC 163157 Query 69297 GGGGAGGCCTTCAAACATATG 69317 ||||||||||||||| ||||| Sbjct 163156 GGGGAGGCCTTCAAAAATATG 163136 >seq1327 Length=1883937 Score = 161 bits (178), Expect = 7e-35 Identities = 140/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || ||||||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 831687 AGTCCGGTGATGTGTGCGATCATGTAGGTAAGAAGCGCATAGCTGGCGATATTGAAAGGC 831746 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| |||||||| || || | |||||| ||||||||||| ||||| ||||||| Sbjct 831747 ACCCCGAGGCCCATGTCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 831806 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| |||||||| | ||||||||| || || |||||||||| | || |||| Sbjct 831807 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTCT 831860 Score = 132 bits (146), Expect = 4e-26 Identities = 134/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| ||||||||||| || || || ||||| ||||| |||||||| ||||||||||| Sbjct 832532 CATGTTTGTGTACTCTGCCCCAAAGTGTCTCCACTGGAAACCGTACACGGGTCCCAGGTC 832591 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || || || | | ||| || ||||||| ||||||| || |||||||| || Sbjct 832592 GCCTTCCTCTCTATCCGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCTTC 832651 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661 ||| ||||| || || ||||| |||||||| |||| ||||| || || |||| Sbjct 832652 CCAAATCTTCACTCCTTTCTCAGAGAGCTCCTTGGCATTTGTTGATCC-CTGA 832703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369480116738834