Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq265 479 4e-130 seq1140 84.2 3e-11 >seq265 Length=606166 Score = 479 bits (530), Expect = 4e-130 Identities = 1268/1921 (66%), Gaps = 33/1921 (2%) Strand=Plus/Plus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || ||||||||||| || || ||||| |||||||| | ||||| || ||||| || || Sbjct 295651 AGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTG 295710 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 ||||| || | ||| | ||| || ||||| |||| || || || || || || || ||| Sbjct 295711 CTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGC 295770 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 || || |||| || | || || || | |||||| | ||| || ||||| || Sbjct 295771 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGC 295830 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 ||||| ||| | ||||| | || ||||| | ||||| || || || || || Sbjct 295831 TTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTG 295890 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAA 77402 || | || || | || || || || || || || | | || || || || Sbjct 295891 CTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAG---CGGCCAGCTCGCAG 295947 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 77462 ||||| |||| || |||| || || || || || || | | || || || || Sbjct 295948 CTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCC 296007 Query 77463 TCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCA 77522 || || |||||||| ||| | | || || |||||||| || || || ||||| ||| Sbjct 296008 TCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCA 296067 Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 || || || || || || | ||| ||||| | | ||||| || | ||||| | ||| Sbjct 296068 ATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTA 296127 Query 77583 ATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGA 77642 || || || || || || | ||| | || | ||||| |||| |||||| | Sbjct 296128 ATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGATGCTAGTTTTTTA 296187 Query 77643 AAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAA 77699 || ||||| | | || | || ||||||| | || || || || |||||||| Sbjct 296188 AAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAG 296247 Query 77700 ACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 || |||||||| | || ||| |||| | || || || || || || || | |||| Sbjct 296248 ACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTG 296307 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 || ||||||||||| || |||||||||||| ||||| | ||| || || || || || Sbjct 296308 ATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTAC 296367 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTA 77877 || || |||||||| |||| || |||||||| | | ||| || || || ||| || | Sbjct 296368 GGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAC--CTGCTGAGCCTTCA 296425 Query 77878 TCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTC 77937 || | ||| | || ||| | |||||| ||| || ||| ||||| || || | Sbjct 296426 CCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCAC 296485 Query 77938 CCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTT 77997 ||||| || |||| || || || ||||| || ||||||| |||||||| | | Sbjct 296486 CCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGT-TG 296544 Query 77998 CCTT-AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 78056 | || |||| ||||| || | || || ||||| || || || || |||| || Sbjct 296545 CTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCC 296604 Query 78057 CTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGC 78116 || || || || |||||||| ||||| || || || || || || | | ||| | ||| Sbjct 296605 CTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGC 296664 Query 78117 CATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATAT 78176 || || || || || || || | |||| |||| ||| || || ||||| || | ||| Sbjct 296665 CACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAA 296724 Query 78177 CTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTT 78236 | || ||||| || |||||||||| ||| || | | ||||| || | || ||||| Sbjct 296725 CGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTG 296784 Query 78237 CCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCC 78296 || | ||| || || || ||| | || || | | | || |||||||| ||| Sbjct 296785 CCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCC 296844 Query 78297 ATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC 78356 ||| || || || || || | |||| || |||||||| || || || ||||| ||| Sbjct 296845 GACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCC 296904 Query 78357 ATCATGTTAAGAAGAAAACAGCTAGACATTTGA----TGATGAACAGTTCCTGCATTAAA 78412 ||||| || || || ||||| |||| ||| || || || || ||||| || Sbjct 296905 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTG----GTACCGGCATTGAA 296960 Query 78413 TAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGC 78472 | || || || || || || ||||| || || || || || ||||| || ||||| || Sbjct 296961 GAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGC 297020 Query 78473 TGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCT 78532 || || |||||| | || || || || | || | ||| | ||| ||||| || | Sbjct 297021 TGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGGACG 297080 Query 78533 TTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 78592 ||| || || || || |||| || ||| || |||| ||| || || ||||| Sbjct 297081 TTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAA 297140 Query 78593 ATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATT- 78651 ||||||| || ||||| | ||| |||| || | || || || ||||||| | Sbjct 297141 GAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTC 297200 Query 78652 -TGGTAACAATATCCATGACAGTAGTT-GAAATAATAGGAGATCGTACACCATTTTTA-- 78707 ||| ||||| || | | | || || || || ||||| || | || | Sbjct 297201 CTGG--ACAATGTCGA-GCGTCTCCTTGGAGATCATGGGAGA--GTGGCGTTTGTTCAAG 297255 Query 78708 GGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTG 78767 || || || ||||| | | || ||||| || || || || | || || || || ||| Sbjct 297256 GGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACACCTTCTTGGTCTCTTTG 297315 Query 78768 TGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTA 78827 || || || || || || || | || || || || ||||| || || |||| || || Sbjct 297316 TGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTCGGGGTGTTTGGTTGTG 297375 Query 78828 CAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATAT 78887 |||||| || || || ||||| | | || | ||| | || ||||| || | || Sbjct 297376 AGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTAC 297435 Query 78888 AGTCCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCA 78947 | || ||||| || ||||| | || | | | ||||| ||||| |||| ||||| || Sbjct 297436 AAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGCCCG 297495 Query 78948 TAACATAATTTTCTAATACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCA 79007 || || | || || || || ||||||||||| || || || ||||| || |||| Sbjct 297496 TAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCA 297555 Query 79008 T 79008 | Sbjct 297556 T 297556 >seq1140 Length=734468 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || || || || ||||||| |||||||| || || ||||||||||| | Sbjct 320387 ATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCCA 320446 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | ||||| ||||| || |||| || || ||||| |||| || ||||| || Sbjct 320447 TTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGAGACTCGATGAT 320505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694616578272960