Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq265 482 3e-131 >seq265 Length=606166 Score = 482 bits (534), Expect = 3e-131 Identities = 1268/1921 (66%), Gaps = 33/1921 (2%) Strand=Plus/Plus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 || ||||||||||| || || ||||| |||||||| | ||||| || ||||| || || Sbjct 295651 AGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTG 295710 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 ||||| || | ||| | ||| || ||||| |||| || || || || || || || ||| Sbjct 295711 CTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGC 295770 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 75880 || || |||| || | || || || | |||||| | ||| || ||||| || Sbjct 295771 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGC 295830 Query 75881 TTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTG 75940 ||||| ||| | ||||| | || ||||| | ||||| || || || || ||| Sbjct 295831 TTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTG 295890 Query 75941 CTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC 76000 || | || || | || || ||||| | ||| || | || || ||||| ||| Sbjct 295891 CTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTC 295950 Query 76001 GCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCA 76060 ||||| | || |||| || || || || || || | | || || ||||| || Sbjct 295951 GCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCCTCG 296010 Query 76061 AGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATA 76120 | || ||||| || ||| | | || || || ||||| || | || ||||| ||||| Sbjct 296011 GGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCAATT 296070 Query 76121 CCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATA 76180 || || || || || | ||| ||||| | || ||||| || | || || | ||||| Sbjct 296071 CCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATC 296130 Query 76181 TCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 76240 || || || || || | ||| |||| | ||||| |||| |||||| ||| Sbjct 296131 TCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGATGCTAGTTTTTTAAAG 296190 Query 76241 TCAAATTTTC---CATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACG 76297 ||||| | | || | || |||| || || || || || || |||||||| || Sbjct 296191 TCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGACC 296250 Query 76298 GCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATA 76357 |||||||| | | ||| |||| | || || ||||| || || || | ||||| Sbjct 296251 GCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATT 296310 Query 76358 GTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGA 76417 || || ||||| || |||||||||||| ||| || | ||| || || || | |||| Sbjct 296311 GTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGC 296370 Query 76418 GTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTA 76475 || || ||||| |||| || |||||||| | | ||| || || || ||| || | | Sbjct 296371 GTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAC--CTGCTGAGCCTTCACCA 296428 Query 76476 TAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCC 76535 | ||| | | ||| | |||||| || || | | ||||| || || |||| Sbjct 296429 CACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCC 296488 Query 76536 AAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCT 76595 || || |||| || ||||| ||||| |||||||||| ||||| || | | | | Sbjct 296489 AACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGT-TGCTT 296547 Query 76596 T-AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTA 76654 | || | ||||| || | || || ||||| || || || || |||| || || Sbjct 296548 TCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTC 296607 Query 76655 CGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCAT 76714 | || || |||||||| ||||| || || || ||||| || | | ||| | ||||| Sbjct 296608 TGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCAC 296667 Query 76715 GGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTG 76774 || || || || || || | | || |||| ||| || || ||||| || | ||| | Sbjct 296668 GGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGT 296727 Query 76775 GCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCA 76834 || ||||| || |||||||||| ||| || | | ||||| || | || ||||| || Sbjct 296728 GCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCG 296787 Query 76835 GAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATT 76894 | ||| || || || || | || || | | | ||| |||||||| ||| Sbjct 296788 GCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCCGAC 296847 Query 76895 TTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATC 76954 || ||||| || ||||| | |||| ||||| |||||||| || || || || ||| || Sbjct 296848 TTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTC 296907 Query 76955 ATGTTAAGAAGAAAACAGCTAGACATTTGA----TGATGAACAGTTCCTGCATTAAACAA 77010 ||| || || || ||||| |||| ||| || || || || ||||| || | Sbjct 296908 ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTG----GTACCGGCATTGAAGAG 296963 Query 77011 TGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGC 77070 ||||| || || || |||||||| || || || || || ||||| || ||||| |||| Sbjct 296964 AGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGC 297023 Query 77071 TTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || || ||| | || || || || | || | ||| | ||| ||||| || ||||| Sbjct 297024 GTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGGACGTTC 297083 Query 77131 TACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 | || || || |||| || ||| || |||| ||| || || ||||| | Sbjct 297084 GGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAA 297143 Query 77191 GTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATT--TG 77248 |||||| || ||||| | ||| |||| || | || || || ||| || | | || Sbjct 297144 GTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCTG 297203 Query 77249 GTAACAATATCCATGACAGT---GGTAGAAATAATTGGAGA-TCGTATTCCATTTTTA-- 77302 | ||||| || || || | || || || ||||| | | || | || | Sbjct 297204 G--ACAATGTC---GAGCGTCTCCTTGGAGATCATGGGAGAGTGGCGTT---TGTTCAAG 297255 Query 77303 GGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTG 77362 || || || ||||| | | ||| ||||| || ||||| || | || || || || ||| Sbjct 297256 GGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACACCTTCTTGGTCTCTTTG 297315 Query 77363 TGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTG 77422 || || || || ||||| || | ||| || || ||||||||||| || |||| || ||| Sbjct 297316 TGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTCGGGGTGTTTGGTTGTG 297375 Query 77423 CAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATAT 77482 ||||| || || || ||||| | || || | || | || || || ||| | || Sbjct 297376 AGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTAC 297435 Query 77483 AGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCA 77542 | || ||||| || ||||| | || | | ||||| ||||| || | ||||| || Sbjct 297436 AAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGCCCG 297495 Query 77543 TAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACATTCTCCTTACATCCA 77602 || || | || || || || ||||||||||| |||||||| ||||| | |||| Sbjct 297496 TAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCA 297555 Query 77603 T 77603 | Sbjct 297556 T 297556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712880805156480