Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1747 149 9e-31 seq962 149 9e-31 seq1372 136 6e-27 seq1821 89.7 7e-13 >seq1747 Length=1312347 Score = 149 bits (164), Expect = 9e-31 Identities = 199/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| ||| || || ||||| || ||| | | ||| | ||||| || ||| || Sbjct 975383 CCCTGGACATTACTGCAGACAAGTTTCTGCAGGGAGGCGGTGTTGACAATGTTGAAGCCG 975442 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| |||||||||||||||||| | |||||||||||| ||| ||| Sbjct 975443 ACGCTGCCTCCGAATGTGCTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCAAT 975502 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | |||||||||||| | || ||||||| ||| | ||| | || || ||||||||||| Sbjct 975503 AAGCCTTTGAGGGAATAAGGTGCCCCCATCTCCACCATGGTTTCCCCAAAGATGGCGTTT 975562 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | ||| || || ||||| | || | ||| ||||||||||| || | || |||||| Sbjct 975563 TCTCTGGGTTTCTCTACCAAAAGACCTGGGTAGAGCTCCACAGCGTCAATGTGTCCGTAC 975622 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || ||| | || || ||||| || ||||||| Sbjct 975623 ATCTCCTCGAGCACTGCGGCCATCTCTTTCTCTCCTG 975659 Score = 129 bits (142), Expect = 8e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 |||||||| ||||||||||| || |||||| ||| || || || | | |||| Sbjct 977267 ATGAGTCGTGTGGTCTGGAAGAGCCTTTCGTCATCCCAGTCAGGGTGAACCTCCTTCAAC 977326 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||||| ||||||||||| |||||||| ||||| |||||||| || || || Sbjct 977327 ACATCACACACCCGGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGG 977386 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 |||||||| |||||||| ||||| ||||| Sbjct 977387 ACCAGGCCGAAAGCCTCGTGACCCACAGC 977415 >seq962 Length=536132 Score = 149 bits (164), Expect = 9e-31 Identities = 199/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| ||| || || ||||| || ||| | | ||| | ||||| || ||| || Sbjct 407990 CCCTGGACATTACTGCAGACAAGTTTCTGCAGGGAGGCGGTGTTGACAATGTTGAAGCCG 407931 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| |||||||||||||||||| | |||||||||||| ||| ||| Sbjct 407930 ACGCTGCCTCCGAATGTGCTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCAAT 407871 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | |||||||||||| | || ||||||| ||| | ||| | || || ||||||||||| Sbjct 407870 AAGCCTTTGAGGGAATAAGGTGCCCCCATCTCCACCATGGTTTCCCCAAAGATGGCGTTT 407811 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | ||| || || ||||| | || | ||| ||||||||||| || | || |||||| Sbjct 407810 TCTCTGGGTTTCTCTACCAAAAGACCTGGGTAGAGCTCCACAGCGTCAATGTGTCCGTAC 407751 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || ||| | || || ||||| || ||||||| Sbjct 407750 ATCTCCTCGAGCACTGCGGCCATCTCTTTCTCTCCTG 407714 Score = 129 bits (142), Expect = 8e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 |||||||| ||||||||||| || |||||| ||| || || || | | |||| Sbjct 406102 ATGAGTCGTGTGGTCTGGAAGAGCCTTTCGTCATCCCAGTCAGGGTGAACCTCCTTCAAC 406043 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||||| ||||||||||| |||||||| ||||| |||||||| || || || Sbjct 406042 ACATCACACACCCGGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGG 405983 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 |||||||| |||||||| ||||| ||||| Sbjct 405982 ACCAGGCCGAAAGCCTCGTGACCCACAGC 405954 >seq1372 Length=1073052 Score = 136 bits (150), Expect = 6e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || ||| || | ||| | | |||| ||| | | Sbjct 785279 GGACACCACTTGGTGTTGAGGCACACCAGATTCTTCAAAGTGGAATTTTTGATGATACTG 785338 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 785339 AAGCCTGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 785398 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| |||||||| || ||||| ||||| |||| ||| | || |||||||| || ||| Sbjct 785399 CCCAACAGGCCTTTCAGAGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAATATG 785458 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 ||| ||| | || |||| || || || | ||| | ||||| ||| |||| ||| Sbjct 785459 CTGTTCCTACGTGTTTTCTCCAGCATGACGCCTGGGTAAAACTCCAAAGCATCGATGTCA 785518 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 785519 CCGTAGAG 785526 >seq1821 Length=2320730 Score = 89.7 bits (98), Expect = 7e-13 Identities = 186/277 (67%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8271 GCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTA 8330 |||||||| || |||| ||||| | | |||||| |||| ||| |||||| | Sbjct 1792957 GCTCCTCAGTTGGTACTCTAAACGCCACGTAAGGACACGTCTTGGTGTTCAGACAGACCA 1792898 Query 8331 GAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGG 8390 | || | || || || || || | || || || | || || |||||||| | Sbjct 1792897 GCTTCTTTAGCGTAGCCGAGTTCACTATGTCAAAGCCGACTTTACCTCCAAAGGTGCTCG 1792838 Query 8391 GCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAG 8450 |||||||||| | || || || || ||| ||| |||||||| |||||||| || | Sbjct 1792837 GCTTCCAGTATTCAGGAGAACATATAGGGTTTCCCAGCAGGCCTTTAAGGGAGAAGGGGG 1792778 Query 8451 CCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510 | |||| ||| | |||||||| || || |||| | || | || || |||| || | Sbjct 1792777 CGCCCATCTCCACCATGCTCTCTCCAAATATGGTGCCCGGTCTGGTTTTCTCCAACATCA 1792718 Query 8511 ATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | |||| || | || |||| |||| ||| ||||| Sbjct 1792717 AACCGGGATAAAATTCAACAGAGTCGATGTCACCGTA 1792681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716822908786560