Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1833 149 2e-30 seq1532 143 6e-29 seq378 86.0 2e-11 >seq1833 Length=1844611 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || ||||| || |||||| | |||||||| || ||| Sbjct 459260 CAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGA--GCCCAGCG 459317 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || || || |||||||| ||||||| Sbjct 459318 ACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGC 459377 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| ||||||||||| ||||| | || || |||| || ||| Sbjct 459378 AGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACA 459437 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| || Sbjct 459438 TCCAGAAGGAGTCCACCCTCCATCTCGT 459465 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || ||||| || |||||||| |||||||| || ||| Sbjct 459716 CAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 459773 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || || || |||||||| ||||||| Sbjct 459774 ACACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGC 459833 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| ||||| || || || ||||| | || || |||| || ||| Sbjct 459834 AGCGTCTCATCTTCGCTGGAAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACA 459893 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| || Sbjct 459894 TCCAGAAGGAGTCCACCCTCCATCTCGT 459921 >seq1532 Length=669350 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| ||||| || || ||| Sbjct 291363 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGCG 291306 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || || || ||| ||| Sbjct 291305 ACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAAGC 291246 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || |||| || ||| Sbjct 291245 AGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 291186 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 291185 TCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 291146 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 291819 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGCG 291762 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || ||||| || || || ||||||| Sbjct 291761 ACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 291702 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| |||||||| | || || |||| || ||| Sbjct 291701 AGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACA 291642 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 291641 TCCAGAAGGAGTCCACCCTTCATCTTGT 291614 >seq378 Length=1964660 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||| |||||||| || || || ||||| |||||||||||||||| ||| || | Sbjct 434823 CAGATTTTTGTGAAAACGCTGACGGGTAAAACCATCACCCTCGAGGTGG--AGCCCAGTG 434880 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||| || || |||||| || || || ||||||||||| Sbjct 434881 ACACCATAGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGG 434923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203638447244716