Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1532 147 2e-30 seq1833 141 9e-29 >seq1532 Length=669350 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || ||||| || ||| ||||||||| || || ||||||||| Sbjct 291368 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 291427 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||| |||||||| || ||||| | ||| ||||| | |||| Sbjct 291428 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291487 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || |||| |||| ||| | | |||||||| | ||| || Sbjct 291488 ATGCCTTCCTTGTCC-TGGATTTTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAAC 291546 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 291547 CTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 Score = 136 bits (150), Expect = 4e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || || || || ||| ||||||||| ||||| ||||||||| Sbjct 291140 CCGCCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291199 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||| |||||||| || ||||| | ||| | ||| | |||| Sbjct 291200 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGA 291259 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || ||||||||| ||| || ||| |||| | || |||||||| | ||| Sbjct 291260 ATGCCTTCCTTGTCCTGGATCTTAGCCTT----GACGTTCTCAATGGTGTCGCTGGGCTC 291315 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 291316 GACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 291366 Score = 136 bits (150), Expect = 4e-27 Identities = 172/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || ||||| || ||| ||||||||| ||||| ||||||||| Sbjct 291596 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291655 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||| |||||||| || ||||| | ||| ||||| | |||| Sbjct 291656 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291715 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || ||||| ||| ||| || ||| |||| | || |||||||| | ||| Sbjct 291716 ATGCCTTCCTTATCCTGGATCTTAGCCTT----GACGTTCTCAATGGTGTCGCTGGGCTC 291771 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || || || || ||||| || || ||||||||||| Sbjct 291772 GACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 291825 >seq1833 Length=1844611 Score = 141 bits (156), Expect = 9e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 459474 AGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 459415 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || |||||||| |||||||| || || || ||||| ||||| | || | || |||| Sbjct 459414 CCATCCTCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCC 459355 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | |||||||| | ||||||||||| || Sbjct 459354 TTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTG 459295 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || |||| ||||| || || |||||||| || Sbjct 459294 ATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATCTT 459254 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || || || ||| ||||||||| ||||| ||||||||||| ||||| Sbjct 459702 AGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGA 459643 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || ||||| || || ||||| ||||| | || | || |||| Sbjct 459642 CCGTCTTCTAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCC 459583 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | |||||||| | ||||||||||| || Sbjct 459582 TTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 459523 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 459522 ATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 459930 AGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 459871 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || ||||| || ||||| || || ||||| ||||| | || | || |||| Sbjct 459870 CCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCC 459811 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 459810 TTATCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTG 459751 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 459750 ATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462269246296800