Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2387 576 2e-159 seq1563 96.9 4e-15 seq2122 93.3 5e-14 >seq2387 Length=643009 Score = 576 bits (638), Expect = 2e-159 Identities = 1297/1942 (67%), Gaps = 19/1942 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| ||| |||| | | |||||| || || || | || ||||| ||||| Sbjct 88097 TTCTTCATCTCCTCACTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTC 88038 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | || || |||||||| | || || || ||||| || || ||||| || | || Sbjct 88037 ACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 87978 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 87977 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 87918 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | | ||| || || || || | | ||| | ||| || Sbjct 87917 AGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCTTCCAGTCCCACAGG 87858 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | || | | | || || || || || ||| || || | Sbjct 87857 TCAGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACGGGGGAGC 87800 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || ||||| ||||| || || || |||| || || || |||||||| | || Sbjct 87799 CTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGG 87740 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || ||||| || ||||||| | || || || || || || ||||| | Sbjct 87739 CGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGCACTTTCAAAGG 87680 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | ||| | || || || || || || || || || ||||| || || || || || | Sbjct 87679 GGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGATTCCTATTGGCCTGT 87620 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | || ||||| || | ||||| || ||||| ||||| || || | Sbjct 87619 GGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAATGTCTATGATCTTGT 87560 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATT---GTC 53681 | |||||| |||| ||||||||| ||||| | ||| || ||| ||||| || Sbjct 87559 TCAGGTTTTTGACGATTACTTTGGTCACATACGCCAGCTTTTTAAAGTCAAAAGTCCGTT 87500 Query 53682 CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 || | | ||| ||||||| | || || || ||||||||||| || |||||||||| Sbjct 87499 CAGGTGTGACATACATGTTGAGAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCCT 87440 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | |||| | || || ||||| || || || || |||||||| || | || | Sbjct 87439 CGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCT 87380 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | || || ||||| |||| || || || || || || ||| |||| ||||| ||||| Sbjct 87379 GCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTG 87320 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCT 53921 ||||||| || ||||| || | ||| | ||||||| | | ||| ||| Sbjct 87319 TCTGGGACTCGATAATGGCGTACCACAGCTGCTGAGCCTTCACCACTCGCTTGACCCTCC 87260 Query 53922 TTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 || | |||||| || || | || ||||| |||||||| | ||||| | Sbjct 87259 CCTCCTTCTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCC 87200 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | || || || | ||||||||||| ||||| ||| || || ||| | ||||| | Sbjct 87199 CGGGGCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGA 87140 Query 54042 AGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 | | || || ||||| || || || ||| |||||||||| ||| || ||||| || ||| Sbjct 87139 ACAAGTCGGGGATCCACAGGGCGTAGAAA-AGATCTCTGGCTCTTTGCTCCTCCTTCCCT 87081 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 || ||||| || || || ||||| | | || ||| | ||||| || |||| ||| ||| Sbjct 87080 GTGTTCTTCTTCAGCTCCAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATG 87021 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | |||| || | ||||| || ||||| || | ||| | || ||||| || ||| Sbjct 87020 GCGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAA 86961 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 ||||||| ||| || | | || ||||| |||||||| |||| || ||||| || Sbjct 86960 ACTCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCC 86901 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | | | || || | | | || || || || ||| ||| ||||| | ||| Sbjct 86900 GTCGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCG 86841 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || | || | ||| ||||| ||||| || || || || ||| ||||| || || || Sbjct 86840 CACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 86781 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 ||||| |||| || | | | ||||| ||||| || | |||||||| ||||| || Sbjct 86780 CAGCTGGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTG 86721 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 ||||| || || || || || ||||| |||||||| || | || ||||| | || Sbjct 86720 AACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGG 86661 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || || || || | ||||| |||||||||||| | || | | || ||||| || Sbjct 86660 ATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTTGATC 86601 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 |||| || |||||| | |||| ||| || || ||||| ||||||| || || |||| Sbjct 86600 TTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTG 86541 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATA 54700 ||| |||| || |||||||||| || || | | | || | || | ||| | Sbjct 86540 TCGAAAATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGGACGATGTCAAGGGT-CTC 86482 Query 54701 CTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTGACATAGTTAAATAAATC 54756 ||| || || || || || | |||| || ||| ||||| ||||| | | || Sbjct 86481 CTTGGAGATCATGGGGGAGTGGCGTTT---GTTCAGAGGGTTGACGTAGTTGTACAGGTC 86425 Query 54757 CTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 54816 || ||| || ||||| || | ||| ||||| |||||||| || || || ||||| || | Sbjct 86424 CTCCATGACATCACTGAACACTTTCTTTGTCTCTTTGTGCAGGTTGGAGACGGCGATCCG 86365 Query 54817 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGT 54876 ||||| || |||||||| || || |||| || || ||||||||| || || || | Sbjct 86364 GGCGGCGAGGATGGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCTGCGATCTCTGCGGC 86305 Query 54877 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||||| || || || || ||||| | || | || ||||| |||||||| | Sbjct 86304 CAGCGTGTCCAGCTCCACTGTGGTGACTCCGCTGTACAAACCCTGGATCACCTTCATCGT 86245 Query 54937 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAG 54995 || | || || | | |||| ||| | || || || || |||| || |||| Sbjct 86244 GATCTGGGCCGGGTCCACAAAGTCAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATGCGAG 86186 Query 54996 ATGTGATTTTATCAAACATGAC 55017 | |||||||| || |||||||| Sbjct 86185 AGGTGATTTTGTCGAACATGAC 86164 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || || ||||||||||| | ||| |||||||| || | || |||| Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||| || | |||| | ||| ||||||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810 >seq1563 Length=18910200 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||||| || || || |||||||| || || || || ||||||| || || || | Sbjct 8608113 CACTAAATATCTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCTATTCGTGCAGCAAGGA 8608172 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || |||| || || ||||| || | || |||| ||||||||||| Sbjct 8608173 TTGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCAGCAGTCTCCGCTGCCAGAGTGTCCA 8608232 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || |||||| | || | || ||||| |||||||| Sbjct 8608233 GCTCCACAGTAGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 8608278 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||||||||| || || ||||| || || | || || ||||||| || || Sbjct 8606310 CACTCGTTTCATAAAGAGGTCTGGGATCCACAGGGCAAAGAACAGGTCTCTGGCCCTCTG 8606369 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || ||||| |||||||| | || | |||| | | | ||| |||||||||| Sbjct 8606370 CTCCTCTTTACCTGTGTTCTTTTTCAACTCTAAGAACTCAAACACATCGTAATGCCACGG 8606429 Query 54148 TTCCAAGTA 54156 |||| ||| Sbjct 8606430 CTCCAGGTA 8606438 >seq2122 Length=1387681 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || ||||| || | || |||||| | || || |||||||||||||| | ||| | Sbjct 1083632 CCTCATCCCTACTGATCAGCTCATTGGAATAGGTAAGCCCGGGCATTAGGCCTCTCTTCT 1083573 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||| | |||| || ||||| ||||| ||||| ||||| || || || ||||| | Sbjct 1083572 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCCTCCACAGCTGCAAAAG 1083513 Query 24277 CAATAAGTC 24285 | | || || Sbjct 1083512 CCACAATTC 1083504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593693338851840