Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1756 179 4e-40 >seq1756 Length=808860 Score = 179 bits (198), Expect = 4e-40 Identities = 146/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || |||||| |||| |||||||| ||||||||| || || | ||||||||| || ||||| Sbjct 97654 CTTGAGGCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAA 97595 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||| ||||| |||||||| ||||| |||||||||||||| || || ||||| || | Sbjct 97594 AGGCACTCCCAGACCCATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATC 97535 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 ||||||||||||||| ||| ||||||||| ||||| |||||| ||||||||| Sbjct 97534 ACACACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTC 97478 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| | ||||||||||||||||||||||| ||||| || || |||||||| || ||| Sbjct 97160 GTACTCTGCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTCGCCCTCCTC 97101 Query 146100 CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 |||| | | ||| | | ||||| ||||||||||||||||| ||||| ||||| Sbjct 97100 TCTGTCCGTGAACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATCCCAAATCTT 97041 Query 146160 GACGCCCCTCGCGGAGAGCTCATTGG 146185 || || |||| |||||||| |||| Sbjct 97040 CACCCCTTTCGCTGAGAGCTCCTTGG 97015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590048712344320