Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2387 123 2e-23 seq14 109 5e-19 >seq2387 Length=643009 Score = 123 bits (136), Expect = 2e-23 Identities = 305/453 (67%), Gaps = 11/453 (2%) Strand=Plus/Minus Query 133512 GCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTT 133570 |||||||||||||| ||||||| ||||| |||| ||||| || ||| || | ||| Sbjct 87767 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGT-GTT 87709 Query 133571 GACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCC 133628 | | | ||| || ||| | || || ||| | | || | || | || || || ||| Sbjct 87708 CA-GCAGCTGAGCCTCGGCACTTTCAAAGGGG-TAACGCATCAGGATGAAGGCATCAGCC 87651 Query 133629 AAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCC 133688 |||||||| | |||| || || || | || || ||| | |||| | || | | Sbjct 87650 AAACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGC 87591 Query 133689 GTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAA 133748 ||||||| ||| | ||| ||||||||||| || || |||||| | ||| |||| | Sbjct 87590 ACCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACA 87531 Query 133749 TGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTC-GACGCACTTGTTGACGGC 133807 | |||| | ||||||| ||| ||| | || ||| || |||||| || Sbjct 87530 TACGCCAGCTTTTTAAAGTCAAAAGTC----CGTTCAGGTGTGACATACATGTTGAGAGC 87475 Query 133808 AATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGC 133867 || ||| |||||||| || || ||| | |||| | || | ||||| || | Sbjct 87474 GATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGT 87415 Query 133868 GCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATG 133927 ||||||||||||||||||||||||||||| || | || ||||| | ||||| Sbjct 87414 GCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGC 87355 Query 133928 ATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 || ||||| |||||||| || |||||||| Sbjct 87354 GTCTTTGTACAGCATGTATGGTGTACCGGTTTC 87322 >seq14 Length=1339370 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| || | ||||| ||| || | Sbjct 521052 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 521111 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||||||||||||||| || ||||| || || ||||| || | Sbjct 521112 GCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTATCCTGGA 521171 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | |||| |||||| || ||||||||| | ||| | || |||| Sbjct 521172 TCTTGGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGC 521231 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | ||||| || || || || ||||||||| || Sbjct 521232 CAGTCAGGGTCTTCACGAAGATCTGCATGCCT 521263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433810265931136