Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 123 2e-23
seq14 109 5e-19
>seq2387
Length=643009
Score = 123 bits (136), Expect = 2e-23
Identities = 305/453 (67%), Gaps = 11/453 (2%)
Strand=Plus/Minus
Query 133512 GCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTT 133570
|||||||||||||| ||||||| ||||| |||| ||||| || ||| || | |||
Sbjct 87767 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGT-GTT 87709
Query 133571 GACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCC 133628
| | | ||| || ||| | || || ||| | | || | || | || || || |||
Sbjct 87708 CA-GCAGCTGAGCCTCGGCACTTTCAAAGGGG-TAACGCATCAGGATGAAGGCATCAGCC 87651
Query 133629 AAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCC 133688
|||||||| | |||| || || || | || || ||| | |||| | || | |
Sbjct 87650 AAACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGC 87591
Query 133689 GTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAA 133748
||||||| ||| | ||| ||||||||||| || || |||||| | ||| |||| |
Sbjct 87590 ACCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACA 87531
Query 133749 TGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTC-GACGCACTTGTTGACGGC 133807
| |||| | ||||||| ||| ||| | || ||| || |||||| ||
Sbjct 87530 TACGCCAGCTTTTTAAAGTCAAAAGTC----CGTTCAGGTGTGACATACATGTTGAGAGC 87475
Query 133808 AATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGC 133867
|| ||| |||||||| || || ||| | |||| | || | ||||| || |
Sbjct 87474 GATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGT 87415
Query 133868 GCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATG 133927
||||||||||||||||||||||||||||| || | || ||||| | |||||
Sbjct 87414 GCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGC 87355
Query 133928 ATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960
|| ||||| |||||||| || ||||||||
Sbjct 87354 GTCTTTGTACAGCATGTATGGTGTACCGGTTTC 87322
>seq14
Length=1339370
Score = 109 bits (120), Expect = 5e-19
Identities = 152/212 (72%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || ||||| || || |||||||| || | ||||| ||| || |
Sbjct 521052 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 521111
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
|||| || || || |||||||||||||||| || ||||| || || ||||| || |
Sbjct 521112 GCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTATCCTGGA 521171
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
| || ||| || | |||| |||||| || ||||||||| | ||| | || ||||
Sbjct 521172 TCTTGGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGC 521231
Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
| ||||| || || || || ||||||||| ||
Sbjct 521232 CAGTCAGGGTCTTCACGAAGATCTGCATGCCT 521263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433810265931136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |