Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq10 322 3e-83 seq3402 111 1e-19 >seq10 Length=14175190 Score = 322 bits (356), Expect = 3e-83 Identities = 614/889 (69%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 107680 TACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCC 107739 |||||| || || ||| |||| ||| |||||| ||||| |||||||| |||||| ||| Sbjct 383147 TACAGTGCCT-CTCAGTGAAGAGGAGAGAGACTTTCCCATAGCCTACTCCATGGTGATCC 383089 Query 107740 ATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATAT 107799 ||||||||||||| | ||||| || || || ||||| || || || ||||||||||| | Sbjct 383088 ATGAGAAGATTGAGATGTTTGAGCGACTTCTACGAGCTGTTTACGCTCCTCAGAACATCT 383029 Query 107800 ACTGTGTCCACGTGGATGTGAAGTCC-CCAGAGACTTTCAAAGAGGCGGTCAAGGCCATT 107858 |||| || |||||||| |||||| | | ||||||||| | |||| || |||| ||| Sbjct 383028 ACTGCGTGCACGTGGACCAAAAGTCCACAAAAGACTTTCAGA-AGGCCGTGGAGGCTATT 382970 Query 107859 ATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCC 107918 | || || || |||||||| || || |||| ||| |||| |||||| || ||||| Sbjct 382969 GTGTCATGTTTTCCCAATGTGTTTATAGCCACTAAATTGGAAAGGGTGGTGTACGCCTCG 382910 Query 107919 TGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCC 107977 |||||| |||| || || || |||||||| ||| |||| |||| || | || || | Sbjct 382909 TGGTCCCGAGTACAGGCAGATCTGAACTGCATGAAAGATCTGCT-CAACTCGCATGTCCG 382851 Query 107978 ATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGAT 108037 |||| |||| | || || || || ||||||||||||||||| || ||||||| ||||| Sbjct 382850 GTGGAGGTACCTGCTCAACACCTGTGGGACAGACTTCCCCATCAAAACCAATGGGGAGAT 382791 Query 108038 GGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG-TACCTTCTG 108096 ||| | | || ||| | || || | ||||| |||||| | |||| ||| | | Sbjct 382790 GGTTAAGACACTGAAGGCCCTAAACGGGAGAAACAGCATGGAGACCGAGGCCACCAACAG 382731 Query 108097 AGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCA 108156 | ||| ||| |||||| | || | | | | || || |||| | || || | Sbjct 382730 -CTACAAGAAAGGCCGCTGGCAGTATCACCACAACGTCACCGACAGTGTCATCCGGACAA 382672 Query 108157 GCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216 || ||| ||| || || | ||||||||| | ||||||||||| |||| Sbjct 382671 ATGTGAGGAAAAGCCCCCCACCAATCAGCAGCCCCATGTTCTCGGGGAATGCCTACTTTG 382612 Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGAC-AACCCTAAATCCCAAAGACTGGTT 108275 ||| | | |||| ||||| |||| || | ||| || | || | ||| | Sbjct 382611 TGGTCACGAGAGCATTTGTGAAACACGTGAT-GACGGACAGAGAGGTTCAGAAACTCCTG 382553 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TG 108333 || |||| || ||||| || ||||||||||| ||| | |||||||| || ||| | || Sbjct 382552 GAGTGGGAGAAGGACACATACAGCCCCGACGAGCACTTGTGGGCCACTCTGCAGAGGATG 382493 Query 108334 CTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTG 108393 | | || | ||||| || || || | || ||||||| | | ||||||||| | Sbjct 382492 CCCTCTG--TTCCTGGGTCAGTGCCCGCCAACGTCAAGTATGATGTATCAGACATGCAGG 382435 Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453 || |||| || | || |||||| || | || ||||| | | || || || | Sbjct 382434 CCTTCGCTCGGGTGGTTAAGTGGAGCTATTTAGCAGGTGATGTGAAAAATGGAGCCCCCT 382375 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 || |||| ||| |||| | || |||| |||| | || || ||||| ||||| Sbjct 382374 ATTCACCTTGCACTGGTTCTTACAGGCGGGCTGTCTGTGTGTATGGAGCCGGTGACCTCC 382315 Query 108514 ACTGGATTCTCCAGA---ACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 ||||| |||| || | || |||||||| ||||| |||||||| || Sbjct 382314 ACTGG---CTCCTGAGCCAGCAACACCTCTTTGCAAATAAGTTTGATCC 382269 >seq3402 Length=17327306 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 |||||||| || ||| |||||||| | || || ||||| || ||||| || |||| ||| Sbjct 14705970 AACTTTGAGCGACTGTTGCGAGCCATCTACGCGCCTCAAAATATATATTGCATCCATGTG 14706029 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || | ||| || || | || |||||||||||| |||||| ||||| Sbjct 14706030 GACAAAAAAGCAGCAGCCTCTGTCTTATCTGCCATCAAGGCCATTACTTCCTGTTTCCCA 14706089 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 || |||||||||| ||||||| || ||||| ||| | ||||| | | || || Sbjct 14706090 AACGTCTTCATGGTCAGTAAGGCTGTGAGCGTGGTGTATTCTGCCTGGCCACGCGTCCAG 14706149 Query 107934 GCTGACCTGAACTGTATGG 107952 |||||||| |||||||||| Sbjct 14706150 GCTGACCTTAACTGTATGG 14706168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 199/294 (68%), Gaps = 9/294 (3%) Strand=Plus/Plus Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 |||| | || |||| ||| |||||||| || || || ||| |||||||| ||| |||| Sbjct 14706631 ACTGATCGAGTGGGCCAAGGACACCTACAGTCCTGATGAATTTCTCTGGGCAACCATTCA 14706690 Query 108329 GCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACA 108387 ||| ||| ||| | |||||||| | | |||||| ||| |||| |||||| Sbjct 14706691 GCGAA-TCCCTGGTGTTCCTGGCTCAACACGGCCCAGCCCCAAATATGACATTACAGACA 14706749 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAG----CA-T 108442 | | ||| || || || | || |||||||||| || ||||| | ||| || | Sbjct 14706750 TTAATGCGATTGCACGGATGGTGAAGTGGCAGTGGCATGAGGGG--TCACAGGGTTCACT 14706807 Query 108443 GGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGC 108502 || |||| | || || || || | |||| ||||| || || | || || || Sbjct 14706808 GGAGGCGGCATACCCAGAGTGTCAAGGCAGCCATGTCAGGGCAATATGTGTATATGGTGC 14706867 Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 || ||||| | ||||| || || | ||||||||||| || || || ||||| Sbjct 14706868 TGGTGACCTACAGTGGATGCTTGAGCAGCATCACCTCTTTGCCAATAAATTTGA 14706921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348252636844992